BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040704
         (376 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...   114   8e-24
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...   113   2e-23
gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptas...   110   9e-23
gb|AAN04214.1| Putative retroelement [Oryza sativa Japonica Grou...    93   3e-17
ref|XP_003528143.1| PREDICTED: uncharacterized protein LOC100778...    92   3e-17

>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score =  114 bits (285), Expect = 8e-24
 Identities = 56/124 (45%), Positives = 81/124 (65%)
 Frame = +2

Query: 5   FKVITKILATRLSPIAKRIINKEQYGFIPNRNSQQAIGLASELINELQIPRYGGSIAIKI 184
           FK+I+KILA RL+ I   I+++EQ GFI  RN +  + LASE IN L    +GG++A K+
Sbjct: 202 FKIISKILADRLAQIMPNIVSQEQRGFIQGRNIKDCVCLASEAINMLDQKSFGGNLAFKV 261

Query: 185 DISQAFDTLDWEFL*AVLHQVGFCEVWIQWLKGAFSSNSMSIMLNSGPKGHFTVERELK* 364
           DIS+AFDTL+W+FL  VL Q GF E +  W+     S  +SI +N   +G+F+  R ++ 
Sbjct: 262 DISKAFDTLNWKFLLKVLKQFGFSETFCNWIDAILQSAKLSICINGSQQGYFSCSRGVRQ 321

Query: 365 GDTI 376
           GD +
Sbjct: 322 GDPL 325


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score =  113 bits (282), Expect = 2e-23
 Identities = 57/124 (45%), Positives = 84/124 (67%)
 Frame = +2

Query: 5   FKVITKILATRLSPIAKRIINKEQYGFIPNRNSQQAIGLASELINELQIPRYGGSIAIKI 184
           FK+I+KILA RL+ I  RII+ EQ GFI +R+  + + LASE IN L+  +YGG++A+K+
Sbjct: 528 FKIISKILADRLADITMRIISVEQRGFIRDRDISKCVILASEAINLLEKRQYGGNVALKV 587

Query: 185 DISQAFDTLDWEFL*AVLHQVGFCEVWIQWLKGAFSSNSMSIMLNSGPKGHFTVERELK* 364
           DI++AFDTLDW FL AVL + GF E ++ W+     S  +S+++N    G FT    ++ 
Sbjct: 588 DIAKAFDTLDWNFLLAVLQRFGFDEKFVHWILVILQSARLSVLVNGKAVGFFTCSHGVRQ 647

Query: 365 GDTI 376
           GD +
Sbjct: 648 GDPL 651


>gb|ABD28670.2| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 642

 Score =  110 bits (276), Expect = 9e-23
 Identities = 55/124 (44%), Positives = 78/124 (62%)
 Frame = +2

Query: 5   FKVITKILATRLSPIAKRIINKEQYGFIPNRNSQQAIGLASELINELQIPRYGGSIAIKI 184
           FK+I K+LA RL+ I   II+KEQ GF+  RN +  I L SE IN L    +GG++A+KI
Sbjct: 263 FKIINKVLADRLAKILPSIISKEQRGFVQGRNIRDCIALTSEAINVLDNKSFGGNLALKI 322

Query: 185 DISQAFDTLDWEFL*AVLHQVGFCEVWIQWLKGAFSSNSMSIMLNSGPKGHFTVERELK* 364
           D+++AFDTL+W+FL  VL   GF E++  W+K    S+ M I +N    G F   R ++ 
Sbjct: 323 DVTKAFDTLNWDFLLLVLKTFGFNELFCNWIKTILHSSKMFISMNGAQHGFFNCNRGVRQ 382

Query: 365 GDTI 376
           GD +
Sbjct: 383 GDPL 386


>gb|AAN04214.1| Putative retroelement [Oryza sativa Japonica Group]
           gi|31430304|gb|AAP52238.1| retrotransposon protein,
           putative, unclassified [Oryza sativa Japonica Group]
          Length = 764

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 47/124 (37%), Positives = 73/124 (58%)
 Frame = +2

Query: 5   FKVITKILATRLSPIAKRIINKEQYGFIPNRNSQQAIGLASELINELQIPRYGGSIAIKI 184
           FK +TKIL  RLS IA+++I + Q  FIP R +   + +  E+++EL+  +  G I  K+
Sbjct: 61  FKFLTKILTRRLSEIAQKVIGESQTAFIPGRQNLDGVVILHEVLHELKKEKKSG-IIFKL 119

Query: 185 DISQAFDTLDWEFL*AVLHQVGFCEVWIQWLKGAFSSNSMSIMLNSGPKGHFTVERELK* 364
           D  +A+D + W FL  VLH+ GF + WIQW+K A     M++ +N   K  F   R ++ 
Sbjct: 120 DFEKAYDKVQWSFLFDVLHKKGFSDRWIQWVKMATIGGKMAVNINGEVKDFFKTYRGVRQ 179

Query: 365 GDTI 376
           GD +
Sbjct: 180 GDPL 183


>ref|XP_003528143.1| PREDICTED: uncharacterized protein LOC100778359 [Glycine max]
          Length = 2621

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 43/125 (34%), Positives = 76/125 (60%)
 Frame = +2

Query: 2    VFKVITKILATRLSPIAKRIINKEQYGFIPNRNSQQAIGLASELINELQIPRYGGSIAIK 181
            ++K++ KILA R+  +   IIN+ Q  FI  R+  Q++ +A+E+I+E +   +   +  K
Sbjct: 1184 MYKIVAKILAKRIKTVLPTIINEAQSAFIEGRHLLQSVLIANEVIDEAK-RSHKPCLIFK 1242

Query: 182  IDISQAFDTLDWEFL*AVLHQVGFCEVWIQWLKGAFSSNSMSIMLNSGPKGHFTVERELK 361
            +D  +A+D++ W FL  +L + GFC  WI W++G   S S+S+++N  P   F  +R L+
Sbjct: 1243 VDYEKAYDSVSWNFLLYMLKRTGFCPKWISWMEGCLKSASISVLVNGSPTKEFKPQRGLR 1302

Query: 362  *GDTI 376
             GD +
Sbjct: 1303 QGDPL 1307