BLASTX nr result
ID: Coptis25_contig00040598
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00040598
(354 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera] 140 1e-31
ref|XP_003523674.1| PREDICTED: pentatricopeptide repeat-containi... 116 2e-24
ref|XP_003617675.1| Pentatricopeptide repeat-containing protein ... 115 3e-24
ref|NP_680777.2| pentatricopeptide repeat-containing protein [Ar... 102 4e-20
ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containi... 91 7e-17
>emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
Length = 1111
Score = 140 bits (353), Expect = 1e-31
Identities = 70/117 (59%), Positives = 87/117 (74%)
Frame = +3
Query: 3 MLSCFGNAGKDYECKAFHGLIIRRNYEFDKMVSSSLLSMYCKCGCLDLAEKLFNGPCEWE 182
MLS F N+ + +E KAFHGLIIRR+Y D+MV ++LLSMYCK G L LAEK F E
Sbjct: 674 MLSSFSNSMRVFEAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQN 733
Query: 183 RDSWNCIVAGYGKVGLETKCIGTFRKMQHIGIESDFSSLPIVISSCFQLGALHLGKS 353
++WN +V+GYGK+GL KCIG FR+MQ +GIESD +SL V+SSC QLGA HL +S
Sbjct: 734 FEAWNLMVSGYGKIGLIMKCIGLFREMQCLGIESDSNSLVSVVSSCSQLGATHLARS 790
Score = 65.1 bits (157), Expect = 6e-09
Identities = 34/100 (34%), Positives = 55/100 (55%)
Frame = +3
Query: 18 GNAGKDYECKAFHGLIIRRNYEFDKMVSSSLLSMYCKCGCLDLAEKLFNGPCEWERDSWN 197
GN G E + HGL+++ ++ ++V SSLLSMY KCG + A + F + SW
Sbjct: 578 GNLGALLEGRCLHGLVVKTGMDYSQVVQSSLLSMYSKCGNPEEAHRSFCEVLNKDIISWT 637
Query: 198 CIVAGYGKVGLETKCIGTFRKMQHIGIESDFSSLPIVISS 317
+++ Y ++G T+CI F +M GI D + ++SS
Sbjct: 638 SMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSS 677
Score = 60.5 bits (145), Expect = 1e-07
Identities = 32/116 (27%), Positives = 60/116 (51%)
Frame = +3
Query: 3 MLSCFGNAGKDYECKAFHGLIIRRNYEFDKMVSSSLLSMYCKCGCLDLAEKLFNGPCEWE 182
+LS + E + H I +EF+ ++++L+ MY KCG L+ + ++FN E +
Sbjct: 875 VLSACSHLASLEEGEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSREIFNSMHERD 934
Query: 183 RDSWNCIVAGYGKVGLETKCIGTFRKMQHIGIESDFSSLPIVISSCFQLGALHLGK 350
+WN +++GYG G I F++M+ + + + V+S+C G + GK
Sbjct: 935 VITWNVMISGYGMHGDARSAIEXFQQMEESSAKPNGLTFLAVLSACAHAGLVKEGK 990
>ref|XP_003523674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Glycine max]
Length = 750
Score = 116 bits (290), Expect = 2e-24
Identities = 60/117 (51%), Positives = 80/117 (68%)
Frame = +3
Query: 3 MLSCFGNAGKDYECKAFHGLIIRRNYEFDKMVSSSLLSMYCKCGCLDLAEKLFNGPCEWE 182
+LS FGN+ ++ KAFHG+IIRR Y D+ V+ SLL MYCK G L LAE++F C+
Sbjct: 312 VLSGFGNSMDVFQGKAFHGVIIRRYYVDDEKVNDSLLFMYCKFGMLSLAERIFP-LCQGS 370
Query: 183 RDSWNCIVAGYGKVGLETKCIGTFRKMQHIGIESDFSSLPIVISSCFQLGALHLGKS 353
D WN +V GYGKVG KC+ FR+MQ +GI S+ + I+SC QLGA++LG+S
Sbjct: 371 GDGWNFMVFGYGKVGENVKCVELFREMQWLGIHSETIGIASAIASCAQLGAVNLGRS 427
>ref|XP_003617675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355519010|gb|AET00634.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 758
Score = 115 bits (289), Expect = 3e-24
Identities = 59/117 (50%), Positives = 80/117 (68%)
Frame = +3
Query: 3 MLSCFGNAGKDYECKAFHGLIIRRNYEFDKMVSSSLLSMYCKCGCLDLAEKLFNGPCEWE 182
+LS FGN+ Y KAFHGLIIRR+Y D+MV +SLLSMYCK G L AE+LF +
Sbjct: 321 ILSGFGNSVDVYGGKAFHGLIIRRHYAPDEMVDNSLLSMYCKFGMLSFAERLFQ-RSQGS 379
Query: 183 RDSWNCIVAGYGKVGLETKCIGTFRKMQHIGIESDFSSLPIVISSCFQLGALHLGKS 353
+ WN ++ GYG++G KCI FR+MQ++GI S+ + I+SC QLG ++LG+S
Sbjct: 380 IEYWNFMIVGYGRIGKNVKCIQLFREMQYLGIRSESVGIVSAIASCGQLGEINLGRS 436
>ref|NP_680777.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635624|sp|Q3E9N1.2|PP359_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At4g39952, mitochondrial; Flags: Precursor
gi|332661744|gb|AEE87144.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 775
Score = 102 bits (253), Expect = 4e-20
Identities = 54/107 (50%), Positives = 70/107 (65%), Gaps = 4/107 (3%)
Frame = +3
Query: 45 KAFHGLIIRRNYEFDKMVSSSLLSMYCKCGCLDLAEKLFNGPC----EWERDSWNCIVAG 212
KAFHG +IR + D V +SLLSMYCK L +AEKLF C E +++WN ++ G
Sbjct: 351 KAFHGFVIRHCFSLDSTVCNSLLSMYCKFELLSVAEKLF---CRISEEGNKEAWNTMLKG 407
Query: 213 YGKVGLETKCIGTFRKMQHIGIESDFSSLPIVISSCFQLGALHLGKS 353
YGK+ KCI FRK+Q++GIE D +S VISSC +GA+ LGKS
Sbjct: 408 YGKMKCHVKCIELFRKIQNLGIEIDSASATSVISSCSHIGAVLLGKS 454
Score = 57.4 bits (137), Expect = 1e-06
Identities = 30/116 (25%), Positives = 58/116 (50%)
Frame = +3
Query: 3 MLSCFGNAGKDYECKAFHGLIIRRNYEFDKMVSSSLLSMYCKCGCLDLAEKLFNGPCEWE 182
+++C N G + H I +E + +S++L+ MY KCG L+ + +LF+ + +
Sbjct: 540 LMACV-NTGSLERGQMIHRYITETEHEMNLSLSAALIDMYAKCGHLEKSRELFDAGNQKD 598
Query: 183 RDSWNCIVAGYGKVGLETKCIGTFRKMQHIGIESDFSSLPIVISSCFQLGALHLGK 350
WN +++GYG G I F +M+ ++ + ++S+C G + GK
Sbjct: 599 AVCWNVMISGYGMHGDVESAIALFDQMEESDVKPTGPTFLALLSACTHAGLVEQGK 654
>ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
mitochondrial-like [Cucumis sativus]
Length = 754
Score = 91.3 bits (225), Expect = 7e-17
Identities = 48/117 (41%), Positives = 73/117 (62%)
Frame = +3
Query: 3 MLSCFGNAGKDYECKAFHGLIIRRNYEFDKMVSSSLLSMYCKCGCLDLAEKLFNGPCEWE 182
ML FGN+ + +E KAFH I+++ + ++LLSMYCK G L A K+F+ +
Sbjct: 317 MLMGFGNSDRIFEGKAFHARILKQCCALSGITHNALLSMYCKFGHLGTANKIFHSFHKSS 376
Query: 183 RDSWNCIVAGYGKVGLETKCIGTFRKMQHIGIESDFSSLPIVISSCFQLGALHLGKS 353
D W+ ++ GY +G + KCI R+M +G E D +SL VISSC Q+GA+++G+S
Sbjct: 377 ED-WSTMILGYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRS 432