BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040547
         (502 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata sub...    70   2e-10
ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thalia...    68   9e-10
gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcrip...    64   1e-08
gb|ABA99647.1| hypothetical protein LOC_Os12g38160 [Oryza sativa...    64   1e-08
emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group] gi...    64   2e-08

>gb|ABW81051.1| tn7 reverse transcriptase [Arabidopsis lyrata subsp. lyrata]
          Length = 441

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 43/130 (33%), Positives = 65/130 (50%), Gaps = 3/130 (2%)
 Frame = -2

Query: 471 WKAYMNALPMGDRLASWKMEGDFSCPLCNTSLEADNHLFFECEWTRKLWFTSSLGLRMEI 292
           W A  N L  GDR+ SW    + SC  C    E  NHLFF C ++R++W     GL  ++
Sbjct: 293 WLATKNRLSTGDRMMSWNAGVNLSCVFCQEQTETRNHLFFTCRYSREVW----SGLTSKL 348

Query: 291 QGRNNTKDW--ISKFISWRNNKNQDIAQAGIQACYILYNIWKTRNEAKF-EQRLPNRERL 121
             R+ + DW  I K ++ +   N  +         ++Y+IWK RN  +  E+ LP+   L
Sbjct: 349 LTRHYSTDWTTILKLLTDKTLGNNRLFLLRYAFQILVYSIWKERNSRRHGEEPLPS-ALL 407

Query: 120 LRRSEVEACN 91
           L+R + E  N
Sbjct: 408 LKRLDKEVRN 417


>ref|NP_194638.1| Ribonuclease H-like protein [Arabidopsis thaliana]
           gi|4972055|emb|CAB43923.1| putative protein [Arabidopsis
           thaliana] gi|7269807|emb|CAB79667.1| putative protein
           [Arabidopsis thaliana] gi|67633766|gb|AAY78807.1|
           putative reverse transcriptase/RNA-dependent DNA
           polymerase [Arabidopsis thaliana]
           gi|332660185|gb|AEE85585.1| Ribonuclease H-like protein
           [Arabidopsis thaliana]
          Length = 575

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 42/130 (32%), Positives = 62/130 (47%), Gaps = 3/130 (2%)
 Frame = -2

Query: 486 IQMFLWKAYMNALPMGDRLASWKMEGDFSCPLCNTSLEADNHLFFECEWTRKLWFTSSLG 307
           IQ FLWK   N+LP+   LA   +  + +C  C +  E  NHL F+C + R  W  SS+ 
Sbjct: 266 IQHFLWKCLSNSLPVAGALAYRHLSKESACIRCPSCKETVNHLLFKCTFARLTWAISSIP 325

Query: 306 LRMEIQGRNNTKDWISKFISW---RNNKNQDIAQAGIQACYILYNIWKTRNEAKFEQRLP 136
           + +         D I   + W     N N    +A     ++L+ +WK RNE  F  R  
Sbjct: 326 IPL----GGEWADSIYVNLYWVFNLGNGNPQWEKASQLVPWLLWRLWKNRNELVFRGREF 381

Query: 135 NRERLLRRSE 106
           N + +LRR+E
Sbjct: 382 NAQEVLRRAE 391


>gb|AAC13599.1| similar to reverse transcriptase (Pfam: transcript_fact.hmm, score:
            72.31) [Arabidopsis thaliana]
          Length = 928

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 36/109 (33%), Positives = 55/109 (50%), Gaps = 5/109 (4%)
 Frame = -2

Query: 474  LWKAYMNALPMGDRLASWKMEGDFSCPLCNTSLEADNHLFFECEWTRKLWFTSSLGLRME 295
            +W A  N L  G R+  W ++    C LCN +LE  +HLFF C +T  +W      L   
Sbjct: 778  VWLAIWNKLSTGQRMQHWNLQSSVGCVLCNNNLETRDHLFFSCAYTSGIW----EALAKN 833

Query: 294  IQGRNNTKDWISKFISWRNNKNQD-----IAQAGIQACYILYNIWKTRN 163
            +  R+ T DW    IS+ + +  D     +A++ +QA   +Y IW+ RN
Sbjct: 834  LLQRSYTTDW-QTIISYVSGQCHDRVSCFLARSVLQAS--VYTIWRERN 879


>gb|ABA99647.1| hypothetical protein LOC_Os12g38160 [Oryza sativa Japonica Group]
          Length = 305

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 43/151 (28%), Positives = 70/151 (46%)
 Frame = -2

Query: 498 LPANIQMFLWKAYMNALPMGDRLASWKMEGDFSCPLCNTSLEADNHLFFECEWTRKLWFT 319
           +P  ++ F+W+   NALP  + L     +   SC  CN S +   HLFF C + R  W  
Sbjct: 63  IPPKVKTFMWRLIRNALPTANNLHFRIPDILDSCHRCN-SAKTSVHLFFHCSFARLSWMI 121

Query: 318 SSLGLRMEIQGRNNTKDWISKFISWRNNKNQDIAQAGIQACYILYNIWKTRNEAKFEQRL 139
           S   L  +I    N+   I  FI   ++K +       + C  L+ IWK RN + F+++ 
Sbjct: 122 SDFKLNFQIIDSMNSVPEIISFILAASSKTESFQ----KFCIFLWFIWKARNGSYFKRKN 177

Query: 138 PNRERLLRRSEVEACNCYKGFTPTRMQNETS 46
               ++   ++V A N Y   T  + Q++ S
Sbjct: 178 WEPSQVCIAADVMASN-YNTLTQAQNQDDNS 207


>emb|CAD41785.1| OSJNBa0035M09.1 [Oryza sativa Japonica Group]
            gi|38346911|emb|CAE03883.2| OSJNBb0015N08.11 [Oryza
            sativa Japonica Group]
          Length = 1026

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 37/125 (29%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
 Frame = -2

Query: 501  KLPANIQMFLWKAYMNALPMGDRLAS--WKMEGDFSCPLCNTSLEADNHLFFECEWTRKL 328
            ++P  I++F+W    N +   D L    W+ +GD  C  C+  +E   HLFF+C   R +
Sbjct: 848  RVPLKIRIFIWFFTKNKILTKDNLLKRGWR-KGDNKCQFCD-KVETVQHLFFDCPLARLI 905

Query: 327  WFTSSLGLRMEIQGRNNTKDWISKFISWRNNKNQDIAQAGIQACYILYNIWKTRNEAKFE 148
            W  + +   + ++   + +D    +I   +   +++   GI A  +L++IWK RN+A FE
Sbjct: 906  W--NIIACALNVKPVLSRQDLFGSWIQSMDKFTKNLVIVGIAA--VLWSIWKCRNKACFE 961

Query: 147  QRLPN 133
            ++LPN
Sbjct: 962  RKLPN 966