BLASTX nr result
ID: Coptis25_contig00040544
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00040544
(363 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003595998.1| Kinesin-4 [Medicago truncatula] gi|355485046... 127 3e-33
gb|ADP20179.1| gag-pol polyprotein [Silene latifolia] 122 4e-32
gb|ADP20178.1| gag-pol polyprotein [Silene latifolia] 121 1e-30
gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum ... 115 7e-30
gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum ... 115 7e-30
>ref|XP_003595998.1| Kinesin-4 [Medicago truncatula] gi|355485046|gb|AES66249.1| Kinesin-4
[Medicago truncatula]
Length = 962
Score = 127 bits (320), Expect(2) = 3e-33
Identities = 58/91 (63%), Positives = 72/91 (79%)
Frame = -1
Query: 291 FWQTLWRKLGTTLQFSSSHHPQTDGQTESVNRSLGNLLKSLVGSNICQWDLVLAQAEFAY 112
F + LW+K+GT LQF+++ HPQTDG TE++NR LGNLL+S VG+N+ QWDL+LA EFAY
Sbjct: 808 FSRILWKKMGTKLQFNNASHPQTDGPTEAINRLLGNLLRSFVGNNMRQWDLILAHIEFAY 867
Query: 111 NRSTSQTTGTSPFEVVYGRNLISPLDLAPLP 19
N ST+Q TG PFEVVYG +SPLDL P P
Sbjct: 868 NNSTNQATGKCPFEVVYGMRPLSPLDLTPSP 898
Score = 39.3 bits (90), Expect(2) = 3e-33
Identities = 19/23 (82%), Positives = 19/23 (82%)
Frame = -3
Query: 358 IVKLCGIPKTITSDRDSKFVSHF 290
IV L GIPKTITSDRD KF SHF
Sbjct: 786 IVCLHGIPKTITSDRDVKFTSHF 808
>gb|ADP20179.1| gag-pol polyprotein [Silene latifolia]
Length = 1475
Score = 122 bits (305), Expect(2) = 4e-32
Identities = 57/95 (60%), Positives = 71/95 (74%)
Frame = -1
Query: 291 FWQTLWRKLGTTLQFSSSHHPQTDGQTESVNRSLGNLLKSLVGSNICQWDLVLAQAEFAY 112
FW+TLW+ L T L FS+SHHPQTDGQTE N++LG +L+ V ++ WDL LAQAEFA+
Sbjct: 1226 FWRTLWKLLKTRLLFSTSHHPQTDGQTEVTNKTLGRILRCTVARSLKDWDLKLAQAEFAF 1285
Query: 111 NRSTSQTTGTSPFEVVYGRNLISPLDLAPLPE*TV 7
NR+ S TTG SPFEVVYG N + P DLAP+ T+
Sbjct: 1286 NRAPSTTTGKSPFEVVYGVNPMMPTDLAPIKRNTI 1320
Score = 41.2 bits (95), Expect(2) = 4e-32
Identities = 18/23 (78%), Positives = 21/23 (91%)
Frame = -3
Query: 358 IVKLCGIPKTITSDRDSKFVSHF 290
+VKL GIPK+I SDRDSKF+SHF
Sbjct: 1204 VVKLHGIPKSIVSDRDSKFMSHF 1226
>gb|ADP20178.1| gag-pol polyprotein [Silene latifolia]
Length = 1518
Score = 121 bits (304), Expect(2) = 1e-30
Identities = 57/97 (58%), Positives = 72/97 (74%)
Frame = -1
Query: 291 FWQTLWRKLGTTLQFSSSHHPQTDGQTESVNRSLGNLLKSLVGSNICQWDLVLAQAEFAY 112
FW+TLW+ L T L FS+SHHPQTDGQTE NR+LG +L+ LV ++ WDL LA AEFA+
Sbjct: 1238 FWKTLWKLLKTKLLFSTSHHPQTDGQTEVTNRTLGRILRCLVSKSLKDWDLKLAAAEFAF 1297
Query: 111 NRSTSQTTGTSPFEVVYGRNLISPLDLAPLPE*TVKL 1
NR+ S TG SPFEVVYG N + PLDL+ +P+ + L
Sbjct: 1298 NRAPSTATGHSPFEVVYGVNPLMPLDLSSVPKENINL 1334
Score = 36.6 bits (83), Expect(2) = 1e-30
Identities = 15/23 (65%), Positives = 20/23 (86%)
Frame = -3
Query: 358 IVKLCGIPKTITSDRDSKFVSHF 290
IV+L G+PKTI SDRD+KF+ +F
Sbjct: 1216 IVRLHGVPKTIVSDRDTKFMGYF 1238
>gb|AAW28578.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 115 bits (287), Expect(2) = 7e-30
Identities = 53/91 (58%), Positives = 68/91 (74%)
Frame = -1
Query: 291 FWQTLWRKLGTTLQFSSSHHPQTDGQTESVNRSLGNLLKSLVGSNICQWDLVLAQAEFAY 112
FW+ LW KLGT L FS+S HPQTDGQTE VNR+LGN+L++++ + W+ L EFAY
Sbjct: 1293 FWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRTLGNMLRAILKGKLTSWEDYLPIVEFAY 1352
Query: 111 NRSTSQTTGTSPFEVVYGRNLISPLDLAPLP 19
NR+ +TG +PFEVVYG N ++PLDL PLP
Sbjct: 1353 NRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1383
Score = 40.4 bits (93), Expect(2) = 7e-30
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = -3
Query: 358 IVKLCGIPKTITSDRDSKFVSHF 290
+VKL GIP+TI SDRD+KF+SHF
Sbjct: 1271 VVKLHGIPRTIVSDRDAKFLSHF 1293
>gb|AAW28577.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1588
Score = 115 bits (287), Expect(2) = 7e-30
Identities = 53/91 (58%), Positives = 68/91 (74%)
Frame = -1
Query: 291 FWQTLWRKLGTTLQFSSSHHPQTDGQTESVNRSLGNLLKSLVGSNICQWDLVLAQAEFAY 112
FW+ LW KLGT L FS+S HPQTDGQTE VNR+LGN+L++++ + W+ L EFAY
Sbjct: 1293 FWRILWGKLGTKLLFSTSCHPQTDGQTEVVNRTLGNMLRAILKGKLTSWEDYLPIVEFAY 1352
Query: 111 NRSTSQTTGTSPFEVVYGRNLISPLDLAPLP 19
NR+ +TG +PFEVVYG N ++PLDL PLP
Sbjct: 1353 NRTFHSSTGKTPFEVVYGFNPLTPLDLLPLP 1383
Score = 40.4 bits (93), Expect(2) = 7e-30
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = -3
Query: 358 IVKLCGIPKTITSDRDSKFVSHF 290
+VKL GIP+TI SDRD+KF+SHF
Sbjct: 1271 VVKLHGIPRTIVSDRDAKFLSHF 1293