BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040537
         (329 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containi...   150   8e-35
emb|CBI26175.3| unnamed protein product [Vitis vinifera]              149   2e-34
ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containi...   149   2e-34
ref|XP_002314420.1| predicted protein [Populus trichocarpa] gi|2...   145   3e-33
ref|XP_002516788.1| pentatricopeptide repeat-containing protein,...   144   1e-32

>ref|XP_003547236.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial-like [Glycine max]
          Length = 912

 Score =  150 bits (380), Expect = 8e-35
 Identities = 69/109 (63%), Positives = 90/109 (82%)
 Frame = -2

Query: 328 EALSVYREMVSAGLAPNEVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATII 149
           EAL +YR M+ +GLA NE+++V+LVSACGRL A+ +G QLH   VK G +CY F+Q TII
Sbjct: 516 EALVMYRAMLRSGLALNEILVVNLVSACGRLNAIGDGWQLHGMVVKKGFDCYNFIQTTII 575

Query: 148 HFYAACSMMDLACLQFESGRKDNITSWNALVAGFVRNKMVDLARQVFNE 2
           HFYAAC MMDLACLQFE G KD++ SWNALV+GF++N+MVD AR++F++
Sbjct: 576 HFYAACGMMDLACLQFEVGAKDHLESWNALVSGFIKNRMVDQARKIFDD 624



 Score = 67.0 bits (162), Expect = 2e-09
 Identities = 31/107 (28%), Positives = 61/107 (57%)
 Frame = -2

Query: 328 EALSVYREMVSAGLAPNEVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATII 149
           EAL V+++M S G+ PN++ +V+++ AC     +   + +H   +K  +E  V +   ++
Sbjct: 384 EALEVFKDMRSDGVVPNDLTLVNVIYACSHFGEILNCRMIHAIAIKLFVEGLVLVSTNLM 443

Query: 148 HFYAACSMMDLACLQFESGRKDNITSWNALVAGFVRNKMVDLARQVF 8
             Y  CS +  A   F+   + N+ SWN ++ G+ +  +VD+AR++F
Sbjct: 444 RAYCLCSGVGEARRLFDRMPEVNLVSWNVMLNGYAKAGLVDMARELF 490



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 33/111 (29%), Positives = 60/111 (54%), Gaps = 3/111 (2%)
 Frame = -2

Query: 325 ALSVYREMVSAGLAPNEVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATIIH 146
           AL ++ +MV++G+ PNEV +V + SA   L  L EG+  H +     +     ++A +I 
Sbjct: 649 ALELFHKMVASGIKPNEVTMVSVFSAIATLGTLKEGRWAHEYICNESIPLNDNLRAALID 708

Query: 145 FYAACSMMDLACLQFESGRKD---NITSWNALVAGFVRNKMVDLARQVFNE 2
            YA C  ++ A LQF +  +D   +++ WNA++ G   +    +   VF++
Sbjct: 709 MYAKCGSINSA-LQFFNQIRDKTFSVSPWNAIICGLASHGHASMCLDVFSD 758


>emb|CBI26175.3| unnamed protein product [Vitis vinifera]
          Length = 619

 Score =  149 bits (377), Expect = 2e-34
 Identities = 69/109 (63%), Positives = 89/109 (81%)
 Frame = -2

Query: 328 EALSVYREMVSAGLAPNEVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATII 149
           EAL +YR M+  G+ PNEVMIVDL+SACGR +A+ EGQQ H   V+TG +CY F+QATII
Sbjct: 269 EALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATII 328

Query: 148 HFYAACSMMDLACLQFESGRKDNITSWNALVAGFVRNKMVDLARQVFNE 2
           HFYAAC  ++LA LQFE G KD+++SWNAL++GFVRN M++ ARQ+F+E
Sbjct: 329 HFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDE 377



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 1/108 (0%)
 Frame = -2

Query: 328 EALSVYREMVSAGLAPNEVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATII 149
           EA+ V+++M  AG+ PNEV +  ++SA   +  +   + LH  + K GLE    +   ++
Sbjct: 167 EAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLV 226

Query: 148 HFYAACS-MMDLACLQFESGRKDNITSWNALVAGFVRNKMVDLARQVF 8
           H Y  CS ++DLA   FE     ++ SW  ++ G+V+ + +  A +++
Sbjct: 227 HMYCVCSRLVDLARDLFERIPAKDVVSWGTIIDGYVQIERLGEALRMY 274



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 29/92 (31%), Positives = 55/92 (59%)
 Frame = -2

Query: 277 EVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATIIHFYAACSMMDLACLQFE 98
           E+ +V  + +C  L+AL +GQQ+H    K+GL   +F++ ++I FY  C ++  A   F+
Sbjct: 52  ELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFD 111

Query: 97  SGRKDNITSWNALVAGFVRNKMVDLARQVFNE 2
           +    +  S N ++AG+V++  +D AR +F +
Sbjct: 112 TCSVLDPVSCNIMLAGYVKSGSLDNARHLFEK 143


>ref|XP_002277532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g19020,
           mitochondrial [Vitis vinifera]
          Length = 694

 Score =  149 bits (377), Expect = 2e-34
 Identities = 69/109 (63%), Positives = 89/109 (81%)
 Frame = -2

Query: 328 EALSVYREMVSAGLAPNEVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATII 149
           EAL +YR M+  G+ PNEVMIVDL+SACGR +A+ EGQQ H   V+TG +CY F+QATII
Sbjct: 299 EALRMYRSMLRTGVGPNEVMIVDLISACGRTMAVSEGQQFHGIIVRTGFDCYDFIQATII 358

Query: 148 HFYAACSMMDLACLQFESGRKDNITSWNALVAGFVRNKMVDLARQVFNE 2
           HFYAAC  ++LA LQFE G KD+++SWNAL++GFVRN M++ ARQ+F+E
Sbjct: 359 HFYAACGEINLAFLQFELGSKDHVSSWNALISGFVRNGMIEQARQLFDE 407



 Score = 75.1 bits (183), Expect = 6e-12
 Identities = 34/107 (31%), Positives = 62/107 (57%)
 Frame = -2

Query: 328 EALSVYREMVSAGLAPNEVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATII 149
           EA+ V+++M  AG+ PNEV +  ++SA   +  +   + LH  + K GLE    +   ++
Sbjct: 167 EAIGVFKDMRFAGVIPNEVTLASVISAYSHVGGILNCRMLHALSFKLGLEALNIVATNLV 226

Query: 148 HFYAACSMMDLACLQFESGRKDNITSWNALVAGFVRNKMVDLARQVF 8
           H Y  CS +  A + F+   + N+ +WN ++ G+ ++ +VDLAR +F
Sbjct: 227 HMYCVCSSLGNARVLFDEIPERNVVTWNVMLNGYSKSGLVDLARDLF 273



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 29/92 (31%), Positives = 55/92 (59%)
 Frame = -2

Query: 277 EVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATIIHFYAACSMMDLACLQFE 98
           E+ +V  + +C  L+AL +GQQ+H    K+GL   +F++ ++I FY  C ++  A   F+
Sbjct: 52  ELTLVSALKSCSSLLALSQGQQIHSLVFKSGLLSNIFVKNSLISFYVKCRLISNARSLFD 111

Query: 97  SGRKDNITSWNALVAGFVRNKMVDLARQVFNE 2
           +    +  S N ++AG+V++  +D AR +F +
Sbjct: 112 TCSVLDPVSCNIMLAGYVKSGSLDNARHLFEK 143



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 30/110 (27%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
 Frame = -2

Query: 325 ALSVYREMVSAGLAPNEVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATIIH 146
           AL ++ EMV+ G+ PNE+ +V + SA   L  L EG+  H + +   +     + A +I 
Sbjct: 432 ALQLFHEMVAGGVQPNEITMVSVFSAIATLGTLMEGRWAHEYILSNSIPLNDNLNAALID 491

Query: 145 FYAACSMMDLACLQFE--SGRKDNITSWNALVAGFVRNKMVDLARQVFNE 2
            YA C  + +A   F     R  +++ WNA++ G   +   +++ ++F++
Sbjct: 492 MYAKCGSITIALQLFYEIQDRVSSVSPWNAIICGLAMHGHANVSLKLFSQ 541


>ref|XP_002314420.1| predicted protein [Populus trichocarpa] gi|222863460|gb|EEF00591.1|
           predicted protein [Populus trichocarpa]
          Length = 571

 Score =  145 bits (366), Expect = 3e-33
 Identities = 65/109 (59%), Positives = 87/109 (79%)
 Frame = -2

Query: 328 EALSVYREMVSAGLAPNEVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATII 149
           EAL +YR MVS GL P+EV ++DL+SACGR +A+ EGQQLHC  VKT  +CY F+QAT+I
Sbjct: 176 EALMMYRLMVSTGLGPSEVTMIDLISACGRAMAIVEGQQLHCVVVKTSFDCYDFVQATVI 235

Query: 148 HFYAACSMMDLACLQFESGRKDNITSWNALVAGFVRNKMVDLARQVFNE 2
           HFY+AC  ++ AC Q E G KD++ S NAL+AGF+RN+++D AR++FNE
Sbjct: 236 HFYSACGRINEACFQLEFGMKDHVASRNALIAGFIRNRIIDQARELFNE 284



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 34/107 (31%), Positives = 63/107 (58%)
 Frame = -2

Query: 328 EALSVYREMVSAGLAPNEVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATII 149
           EA+ VY+EM S G+ PNEV +  ++SAC R+  + + + LH   +K   + +V +   ++
Sbjct: 44  EAIKVYKEMRSVGVVPNEVTMASVISACCRVGRIWDCRMLHGLVIKMMFDGFVLVSTNLL 103

Query: 148 HFYAACSMMDLACLQFESGRKDNITSWNALVAGFVRNKMVDLARQVF 8
           + Y A S +  A   F+  ++ N+ SWN ++ G+ +    +LA++VF
Sbjct: 104 NMYCASSSLGEARALFDEMQEKNVVSWNVMLNGYSKAGFANLAKEVF 150



 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 29/110 (26%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
 Frame = -2

Query: 325 ALSVYREMVSAGLAPNEVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATIIH 146
           AL ++  MV++G+ PNEV +V + SA   L  L EG+  H +     +     + A+II 
Sbjct: 309 ALELFHRMVTSGIRPNEVTMVSVFSAIAALGTLKEGRWAHEYVHYNSIPLNDNLSASIID 368

Query: 145 FYAACSMMDLACLQFES--GRKDNITSWNALVAGFVRNKMVDLARQVFNE 2
            YA C  ++ A   F     +   ++ WN ++ G   +    L+ +++++
Sbjct: 369 MYAKCGSINTALEVFYQIRDKASTVSPWNTIICGLATHGHAKLSLEIYSD 418


>ref|XP_002516788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543876|gb|EEF45402.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 710

 Score =  144 bits (362), Expect = 1e-32
 Identities = 65/109 (59%), Positives = 85/109 (77%)
 Frame = -2

Query: 328 EALSVYREMVSAGLAPNEVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATII 149
           EAL +YR M+SAG  PN+VM+VDL+S CGR +A+ EGQQL    VK G +CY F+Q+TII
Sbjct: 313 EALMMYRSMISAGWEPNDVMMVDLISGCGRTMAMTEGQQLLSAVVKMGFDCYDFIQSTII 372

Query: 148 HFYAACSMMDLACLQFESGRKDNITSWNALVAGFVRNKMVDLARQVFNE 2
           H YAAC  ++ ACLQF  G K+N+ SWNAL+AG+VRN+M+D A ++FNE
Sbjct: 373 HLYAACGRINEACLQFRIGSKENVASWNALIAGYVRNRMIDRAMELFNE 421



 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 34/107 (31%), Positives = 56/107 (52%)
 Frame = -2

Query: 328 EALSVYREMVSAGLAPNEVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATII 149
           +A+ ++++M + G+ PNEV I  LVSA      +   + LH   +K   E +V +   ++
Sbjct: 181 QAVELFKQMRNVGVVPNEVTIATLVSAYSHFGGIWACRMLHGLVIKMLFEEFVLVSTNLL 240

Query: 148 HFYAACSMMDLACLQFESGRKDNITSWNALVAGFVRNKMVDLARQVF 8
             Y  CS +  A   F+   + NI SWN ++ G+ +   VD AR VF
Sbjct: 241 RMYCVCSSLVEARALFDEMPEKNIVSWNVMLNGYSKAGFVDSARVVF 287



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 26/92 (28%), Positives = 55/92 (59%)
 Frame = -2

Query: 277 EVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATIIHFYAACSMMDLACLQFE 98
           E+++V  +  C   + L +G+Q+HC   K+GL    F+Q ++I+ Y  C ++  A   F+
Sbjct: 66  ELVLVSALKFCSDHLFLSQGKQIHCLVSKSGLGSNNFIQNSLINMYGKCGLLVDAKSIFD 125

Query: 97  SGRKDNITSWNALVAGFVRNKMVDLARQVFNE 2
              + +  S+N +++G+V++  +D A ++F+E
Sbjct: 126 VCPRSDPVSYNVMISGYVKSGQLDYACELFDE 157



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 2/110 (1%)
 Frame = -2

Query: 325 ALSVYREMVSAGLAPNEVMIVDLVSACGRLVALDEGQQLHCWTVKTGLECYVFMQATIIH 146
           AL ++ +MV++G+ PNEV +V ++SA      L EG+  H +     +     + A II 
Sbjct: 446 ALELFHKMVASGIKPNEVTMVSVLSAIATSGTLKEGRWAHEYVHNNSITVSDNLSAAIID 505

Query: 145 FYAACSMMDLACLQFESGRK--DNITSWNALVAGFVRNKMVDLARQVFNE 2
            YA C  ++ A   F   R+    ++ WNA++ G   +   +L+ ++F++
Sbjct: 506 MYAKCGSINNALEVFYEIREKASTVSPWNAIICGLAVHGHANLSLKIFSD 555