BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040523
         (463 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269319.2| PREDICTED: pentatricopeptide repeat-containi...   209   2e-52
ref|XP_003535694.1| PREDICTED: pentatricopeptide repeat-containi...   180   9e-44
ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   160   8e-38
ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat...   160   8e-38
ref|XP_002300388.1| predicted protein [Populus trichocarpa] gi|2...   158   4e-37

>ref|XP_002269319.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 532

 Score =  209 bits (532), Expect = 2e-52
 Identities = 95/151 (62%), Positives = 123/151 (81%)
 Frame = -3

Query: 461 IIGFAVNGQGKEALKLFSRMEEFGLYPNGGTFLAVLSACNHSGMVDEGRRVFLDMVPRHS 282
           I+G A+NG+G+EAL+LFS+M+E  L PN GTFL VL AC+HSG++D GR++FLDM+P  S
Sbjct: 229 IMGLAINGEGEEALRLFSKMQELSLRPNSGTFLGVLCACSHSGLLDTGRQMFLDMIPHFS 288

Query: 281 TFPELEHYACYVDLLARAGHVEEALEVFGSMPVEANSLVWGALLQGCLTHGRIDVAQDIA 102
             PELEHYACYVDLLAR G +EEA EV  SMP   N+ VWGALLQGC  H R+++AQD++
Sbjct: 289 VPPELEHYACYVDLLARVGLLEEAFEVVASMPFVPNNFVWGALLQGCRLHSRLELAQDVS 348

Query: 101 RRLVKLNPTSSAGYVMLSNMYASDQRWGDIS 9
           ++LVK++P +SAGYVM SN  ASDQ+WG++S
Sbjct: 349 QKLVKVDPENSAGYVMFSNALASDQQWGEVS 379


>ref|XP_003535694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 634

 Score =  180 bits (457), Expect = 9e-44
 Identities = 85/151 (56%), Positives = 117/151 (77%)
 Frame = -3

Query: 461 IIGFAVNGQGKEALKLFSRMEEFGLYPNGGTFLAVLSACNHSGMVDEGRRVFLDMVPRHS 282
           I+G AV G+G++AL+LF ++ EFGL PN GTFL  LSAC+HSG++  GR++F ++    S
Sbjct: 421 IMGLAVYGKGEDALRLFYKIPEFGLQPNAGTFLGALSACSHSGLLVRGRQIFRELTL--S 478

Query: 281 TFPELEHYACYVDLLARAGHVEEALEVFGSMPVEANSLVWGALLQGCLTHGRIDVAQDIA 102
           T   LEH ACY+DLLAR G +EEA+EV  SMP + N+ VWGALL GCL H R+++AQ+++
Sbjct: 479 TTLTLEHCACYIDLLARVGCIEEAIEVVTSMPFKPNNFVWGALLGGCLLHSRVELAQEVS 538

Query: 101 RRLVKLNPTSSAGYVMLSNMYASDQRWGDIS 9
           RRLV+++P +SAGYVML+N  ASD +W D+S
Sbjct: 539 RRLVEVDPDNSAGYVMLANALASDNQWSDVS 569


>ref|XP_004158817.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g15930-like [Cucumis
           sativus]
          Length = 744

 Score =  160 bits (406), Expect = 8e-38
 Identities = 72/150 (48%), Positives = 108/150 (72%)
 Frame = -3

Query: 461 IIGFAVNGQGKEALKLFSRMEEFGLYPNGGTFLAVLSACNHSGMVDEGRRVFLDMVPRHS 282
           I+G AVNG G++AL +FS M +  + P+  T++ VLSAC H+G+VD+GR+ FL M  +H 
Sbjct: 445 IVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHG 504

Query: 281 TFPELEHYACYVDLLARAGHVEEALEVFGSMPVEANSLVWGALLQGCLTHGRIDVAQDIA 102
             P + HY C VDLLARAG ++EA EV  +MP++ANS+VWGALL GC  +   D+A+ + 
Sbjct: 505 IEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVV 564

Query: 101 RRLVKLNPTSSAGYVMLSNMYASDQRWGDI 12
           +++++L P + A YV+L N+YA+ +RW D+
Sbjct: 565 KQILELEPDNGAVYVLLCNIYAACKRWNDL 594


>ref|XP_004136090.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Cucumis sativus]
          Length = 723

 Score =  160 bits (406), Expect = 8e-38
 Identities = 72/150 (48%), Positives = 108/150 (72%)
 Frame = -3

Query: 461 IIGFAVNGQGKEALKLFSRMEEFGLYPNGGTFLAVLSACNHSGMVDEGRRVFLDMVPRHS 282
           I+G AVNG G++AL +FS M +  + P+  T++ VLSAC H+G+VD+GR+ FL M  +H 
Sbjct: 424 IVGLAVNGHGEKALDMFSNMLKASILPDEITYIGVLSACTHTGLVDKGRKYFLRMTSQHG 483

Query: 281 TFPELEHYACYVDLLARAGHVEEALEVFGSMPVEANSLVWGALLQGCLTHGRIDVAQDIA 102
             P + HY C VDLLARAG ++EA EV  +MP++ANS+VWGALL GC  +   D+A+ + 
Sbjct: 484 IEPNIAHYGCLVDLLARAGRLKEAYEVIENMPIKANSIVWGALLAGCRVYRESDMAEMVV 543

Query: 101 RRLVKLNPTSSAGYVMLSNMYASDQRWGDI 12
           +++++L P + A YV+L N+YA+ +RW D+
Sbjct: 544 KQILELEPDNGAVYVLLCNIYAACKRWNDL 573


>ref|XP_002300388.1| predicted protein [Populus trichocarpa] gi|222847646|gb|EEE85193.1|
           predicted protein [Populus trichocarpa]
          Length = 514

 Score =  158 bits (400), Expect = 4e-37
 Identities = 73/149 (48%), Positives = 102/149 (68%)
 Frame = -3

Query: 461 IIGFAVNGQGKEALKLFSRMEEFGLYPNGGTFLAVLSACNHSGMVDEGRRVFLDMVPRHS 282
           I G A++GQ +EAL LFS M + G+ PNG TF+ +L AC+H G++DEGRR F  M   + 
Sbjct: 215 IAGLAMHGQAEEALCLFSEMIKLGVKPNGVTFIGLLHACSHMGLIDEGRRFFASMTADYG 274

Query: 281 TFPELEHYACYVDLLARAGHVEEALEVFGSMPVEANSLVWGALLQGCLTHGRIDVAQDIA 102
             P++EHY C VDL +RAG +EEA E   SMP++ N +VWGALL GC  H  ID+A++  
Sbjct: 275 VIPQIEHYGCVVDLFSRAGLLEEAHEFILSMPIKPNGVVWGALLGGCKVHKNIDLAEEAI 334

Query: 101 RRLVKLNPTSSAGYVMLSNMYASDQRWGD 15
           + L +L+P +   YV++SN+YA  +RW D
Sbjct: 335 KHLSELDPLNDGYYVVISNIYAEAERWED 363



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 41/130 (31%), Positives = 65/130 (50%), Gaps = 4/130 (3%)
 Frame = -3

Query: 461 IIGFAVNGQGKEALKLFSRMEEFGLYPNGGTFLAVLSACNHSGMVDEGRRVFLDMVPRHS 282
           I GF   G+  EA+ LF ++E+  + PN  T ++VL+AC   G +D GR     +V  +S
Sbjct: 114 ISGFVQCGKPNEAIDLFMKLEDEAVRPNEVTVVSVLAACADLGDLDLGR-----IVHEYS 168

Query: 281 T---FPELEHYA-CYVDLLARAGHVEEALEVFGSMPVEANSLVWGALLQGCLTHGRIDVA 114
           T   F    H     +D+  + G +E A  VF  M  E   + W A++ G   HG+ + A
Sbjct: 169 TKSGFKRNVHVCNTLIDMYVKCGCLENARRVFYEME-ERTVVSWSAMIAGLAMHGQAEEA 227

Query: 113 QDIARRLVKL 84
             +   ++KL
Sbjct: 228 LCLFSEMIKL 237