BLASTX nr result

ID: Coptis25_contig00040511 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040511
         (554 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002309956.1| predicted protein [Populus trichocarpa] gi|2...    73   3e-11
ref|XP_002306289.1| predicted protein [Populus trichocarpa] gi|2...    71   1e-10
gb|AFK46515.1| unknown [Medicago truncatula]                           70   3e-10
ref|XP_003601916.1| hypothetical protein MTR_3g086760 [Medicago ...    70   3e-10
ref|XP_003538602.1| PREDICTED: uncharacterized protein LOC100780...    67   1e-09

>ref|XP_002309956.1| predicted protein [Populus trichocarpa] gi|222852859|gb|EEE90406.1|
           predicted protein [Populus trichocarpa]
          Length = 211

 Score = 73.2 bits (178), Expect = 3e-11
 Identities = 48/110 (43%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
 Frame = +1

Query: 229 SEKKKNNNKCYMTEEELVVMGPVPLSHSPSKWSGPNLLQNCDLPPPVKVFAGTDKNVLNS 408
           S  +K N++    +E  +++GP+    SPS  SG +L+QNCDLPPP+KVF+G+DK V++S
Sbjct: 7   SNNQKMNSRAL--KENDLLLGPLL---SPS--SGFDLMQNCDLPPPLKVFSGSDKTVISS 59

Query: 409 IRPKHISKVSQE--VEDRELSSTKIPNESEKLELMKALQLSQSRARTAER 552
           +  +  S + +E   +D ++S        EKLE++KAL+LSQ+RAR AER
Sbjct: 60  MN-RAFSMIGREHDHDDFDVSRGCGGENYEKLEVLKALRLSQTRARDAER 108


>ref|XP_002306289.1| predicted protein [Populus trichocarpa] gi|222855738|gb|EEE93285.1|
           predicted protein [Populus trichocarpa]
          Length = 211

 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 38/77 (49%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
 Frame = +1

Query: 325 SGPNLLQNCDLPPPVKVFAGTDKNVLNSI-RPKHISKVSQEVEDRELSSTKIPNESEKLE 501
           SG +LLQNCDLPPP+KVF+ +D+ V++S+ R   +++   + +D ++ S       EKLE
Sbjct: 32  SGTDLLQNCDLPPPLKVFSWSDRTVISSMNRGFSMTRREHDRDDFDVYSGSGGENYEKLE 91

Query: 502 LMKALQLSQSRARTAER 552
           L+KAL+LSQ+RAR AER
Sbjct: 92  LLKALRLSQTRAREAER 108


>gb|AFK46515.1| unknown [Medicago truncatula]
          Length = 208

 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 42/94 (44%), Positives = 63/94 (67%), Gaps = 4/94 (4%)
 Frame = +1

Query: 283 VMGPVPLSHSPSKWSGPNLLQNCDLPPPVKVFAGTDKNVLNSI-RPKHISKVSQEVEDRE 459
           VMG   +SH P+   G +L+QNCDLPPP KVF G DK V+ S+ R  +IS   +E + ++
Sbjct: 16  VMG-FKVSHKPA---GFDLMQNCDLPPPSKVFLGPDKTVIFSMNRVCNISGKEEEQDSKQ 71

Query: 460 LSSTKIPN---ESEKLELMKALQLSQSRARTAER 552
             + ++ N   E +K++L+KAL+ SQ+RAR AE+
Sbjct: 72  YGTYQLENGDDEKDKMKLLKALEASQTRAREAEK 105


>ref|XP_003601916.1| hypothetical protein MTR_3g086760 [Medicago truncatula]
           gi|355490964|gb|AES72167.1| hypothetical protein
           MTR_3g086760 [Medicago truncatula]
          Length = 208

 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 42/94 (44%), Positives = 63/94 (67%), Gaps = 4/94 (4%)
 Frame = +1

Query: 283 VMGPVPLSHSPSKWSGPNLLQNCDLPPPVKVFAGTDKNVLNSI-RPKHISKVSQEVEDRE 459
           VMG   +SH P+   G +L+QNCDLPPP KVF G DK V+ S+ R  +IS   +E + ++
Sbjct: 16  VMG-FKVSHKPA---GFDLMQNCDLPPPSKVFLGPDKTVIFSMNRVCNISGKEEEQDSKQ 71

Query: 460 LSSTKIPN---ESEKLELMKALQLSQSRARTAER 552
             + ++ N   E +K++L+KAL+ SQ+RAR AE+
Sbjct: 72  YGTYQLENGDDEKDKMKLLKALEASQTRAREAEK 105


>ref|XP_003538602.1| PREDICTED: uncharacterized protein LOC100780616 [Glycine max]
          Length = 194

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 37/86 (43%), Positives = 57/86 (66%), Gaps = 3/86 (3%)
 Frame = +1

Query: 304 SHSPSKWSGPNLLQNCDLPPPVKVFAGTDKNVLNSIRPKHISKVSQEVEDRELSSTKIPN 483
           SH+    SG +L+QNCDLPPP K F G DK+V+ S+  +  S+  ++   ++  + +I N
Sbjct: 24  SHNKPSASGFDLMQNCDLPPPSKFFMGPDKSVILSMN-RVYSREEEQDSKQQSGAYRIEN 82

Query: 484 ---ESEKLELMKALQLSQSRARTAER 552
              E +K+EL+KAL+ SQ+RAR AE+
Sbjct: 83  GDDEKDKMELLKALRASQTRAREAEK 108


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