BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040458
         (482 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_567015.1| splicing factor 3B subunit 3 [Arabidopsis thali...   242   2e-62
ref|XP_002282354.1| PREDICTED: splicing factor 3B subunit 3-like...   240   8e-62
emb|CAN64633.1| hypothetical protein VITISV_043788 [Vitis vinifera]   240   8e-62
ref|XP_002876288.1| predicted protein [Arabidopsis lyrata subsp....   239   2e-61
ref|XP_002878025.1| hypothetical protein ARALYDRAFT_906938 [Arab...   239   2e-61

>ref|NP_567015.1| splicing factor 3B subunit 3 [Arabidopsis thaliana]
            gi|18410226|ref|NP_567016.1| putative splicing factor
            [Arabidopsis thaliana] gi|7019653|emb|CAB75754.1|
            spliceosomal-like protein [Arabidopsis thaliana]
            gi|7019655|emb|CAB75756.1| spliceosomal-like protein
            [Arabidopsis thaliana] gi|332645831|gb|AEE79352.1|
            splicing factor 3B subunit 3 [Arabidopsis thaliana]
            gi|332645833|gb|AEE79354.1| putative splicing factor
            [Arabidopsis thaliana]
          Length = 1214

 Score =  242 bits (618), Expect = 2e-62
 Identities = 112/160 (70%), Positives = 138/160 (86%)
 Frame = +2

Query: 2    ETMIPLRYTPRKLVHHPNGKQLIVIESEQGAFSAEERKAARKDCLKAVGMEVNGNHNAQK 181
            ET++PLRYTPRK V HP  K L++IES+QGAF+AEER+AARK+C +A G+  NGN NA +
Sbjct: 771  ETVVPLRYTPRKFVLHPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQ 830

Query: 182  VENSNDDEEICGSLSDEQYGYPKAESQNWVSCIRVIEPRTETTTCLLELQDNEAAFSVCT 361
            +EN  DDE+    LSDEQYGYPKAES+ WVSCIRV++P+T TTTCLLELQDNEAA+SVCT
Sbjct: 831  MENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCT 890

Query: 362  VNFNNKEYGMLLAVGTVKGLKFWPKRSHAAGFIHIYRFID 481
            VNF++KEYG LLAVGTVKG++FWPK++  AGFIHIYRF++
Sbjct: 891  VNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVE 930


>ref|XP_002282354.1| PREDICTED: splicing factor 3B subunit 3-like [Vitis vinifera]
          Length = 1214

 Score =  240 bits (613), Expect = 8e-62
 Identities = 112/160 (70%), Positives = 134/160 (83%)
 Frame = +2

Query: 2    ETMIPLRYTPRKLVHHPNGKQLIVIESEQGAFSAEERKAARKDCLKAVGMEVNGNHNAQK 181
            ET+IPLRYTPRK V  P  K L+VIES+QGAF+AEER+AA+K+C +A GM  NGN N ++
Sbjct: 771  ETVIPLRYTPRKFVLQPKRKLLVVIESDQGAFAAEEREAAKKECFEAAGMGENGNGNVEQ 830

Query: 182  VENSNDDEEICGSLSDEQYGYPKAESQNWVSCIRVIEPRTETTTCLLELQDNEAAFSVCT 361
            +EN  DDE+    LSDEQYGYPKAES  WVSCIR+++PRT TTTCLLELQDNEAAFS+CT
Sbjct: 831  MENGGDDEDKDDPLSDEQYGYPKAESDKWVSCIRILDPRTATTTCLLELQDNEAAFSICT 890

Query: 362  VNFNNKEYGMLLAVGTVKGLKFWPKRSHAAGFIHIYRFID 481
            VNF++KEYG LLAVGT K L+FWPKRS  AG+IHIYRF++
Sbjct: 891  VNFHDKEYGTLLAVGTAKSLQFWPKRSFDAGYIHIYRFLE 930


>emb|CAN64633.1| hypothetical protein VITISV_043788 [Vitis vinifera]
          Length = 1143

 Score =  240 bits (613), Expect = 8e-62
 Identities = 112/160 (70%), Positives = 134/160 (83%)
 Frame = +2

Query: 2    ETMIPLRYTPRKLVHHPNGKQLIVIESEQGAFSAEERKAARKDCLKAVGMEVNGNHNAQK 181
            ET+IPLRYTPRK V  P  K L+VIES+QGAF+AEER+AA+K+C +A GM  NGN N ++
Sbjct: 730  ETVIPLRYTPRKFVLQPKRKLLVVIESDQGAFAAEEREAAKKECFEAAGMGENGNGNVEQ 789

Query: 182  VENSNDDEEICGSLSDEQYGYPKAESQNWVSCIRVIEPRTETTTCLLELQDNEAAFSVCT 361
            +EN  DDE+    LSDEQYGYPKAES  WVSCIR+++PRT TTTCLLELQDNEAAFS+CT
Sbjct: 790  MENGGDDEDKDDPLSDEQYGYPKAESDKWVSCIRILDPRTATTTCLLELQDNEAAFSICT 849

Query: 362  VNFNNKEYGMLLAVGTVKGLKFWPKRSHAAGFIHIYRFID 481
            VNF++KEYG LLAVGT K L+FWPKRS  AG+IHIYRF++
Sbjct: 850  VNFHDKEYGTLLAVGTAKSLQFWPKRSFDAGYIHIYRFLE 889


>ref|XP_002876288.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297322126|gb|EFH52547.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 633

 Score =  239 bits (610), Expect = 2e-61
 Identities = 111/160 (69%), Positives = 137/160 (85%)
 Frame = +2

Query: 2   ETMIPLRYTPRKLVHHPNGKQLIVIESEQGAFSAEERKAARKDCLKAVGMEVNGNHNAQK 181
           ET++PLRYTPRK V  P  K L++IES+QGAF+AEER+AARK+C +A G+  NGN NA +
Sbjct: 190 ETVVPLRYTPRKFVLQPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQ 249

Query: 182 VENSNDDEEICGSLSDEQYGYPKAESQNWVSCIRVIEPRTETTTCLLELQDNEAAFSVCT 361
           +EN  DDE+    LSDEQYGYPKAES+ WVSCIRV++P+T TTTCLLELQDNEAA+SVCT
Sbjct: 250 MENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRVLDPKTATTTCLLELQDNEAAYSVCT 309

Query: 362 VNFNNKEYGMLLAVGTVKGLKFWPKRSHAAGFIHIYRFID 481
           VNF++KEYG LLAVGTVKG++FWPK++  AGFIHIYRF++
Sbjct: 310 VNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVE 349


>ref|XP_002878025.1| hypothetical protein ARALYDRAFT_906938 [Arabidopsis lyrata subsp.
           lyrata] gi|297323863|gb|EFH54284.1| hypothetical protein
           ARALYDRAFT_906938 [Arabidopsis lyrata subsp. lyrata]
          Length = 454

 Score =  239 bits (609), Expect = 2e-61
 Identities = 110/160 (68%), Positives = 137/160 (85%)
 Frame = +2

Query: 2   ETMIPLRYTPRKLVHHPNGKQLIVIESEQGAFSAEERKAARKDCLKAVGMEVNGNHNAQK 181
           ET++PLRYTPRK V  P  K L++IES+QGAF+AEER+AARK+C +A G+  NGN NA +
Sbjct: 11  ETVVPLRYTPRKFVLQPKRKLLVIIESDQGAFTAEEREAARKECFEAGGVGENGNGNADQ 70

Query: 182 VENSNDDEEICGSLSDEQYGYPKAESQNWVSCIRVIEPRTETTTCLLELQDNEAAFSVCT 361
           +EN  DDE+    LSDEQYGYPKAES+ WVSCIR+++P+T TTTCLLELQDNEAA+SVCT
Sbjct: 71  MENGADDEDKEDPLSDEQYGYPKAESEKWVSCIRILDPKTATTTCLLELQDNEAAYSVCT 130

Query: 362 VNFNNKEYGMLLAVGTVKGLKFWPKRSHAAGFIHIYRFID 481
           VNF++KEYG LLAVGTVKG++FWPK++  AGFIHIYRF++
Sbjct: 131 VNFHDKEYGTLLAVGTVKGMQFWPKKNLVAGFIHIYRFVE 170