BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040400
         (416 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containi...    70   1e-10
ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containi...    68   7e-10
emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]    68   9e-10
ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containi...    67   1e-09
ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containi...    67   1e-09

>ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 666

 Score = 70.5 bits (171), Expect = 1e-10
 Identities = 40/91 (43%), Positives = 50/91 (54%)
 Frame = -1

Query: 290 SNNHGPTTTKLNSCSKYIEARRLFDKLSKRTSPLYNVMIKYYTQHHQPKLALHLFTEMLT 111
           SN      T    C     A  LFDKLS+     +N M++ Y Q  +P  AL+LF EML 
Sbjct: 46  SNLCSKLATTYAQCHHASYASHLFDKLSQPCLFSWNAMMRMYVQIGRPFDALNLFVEMLG 105

Query: 110 LGQHKPDNFTFPLVFKACSDLSMIKTGETIH 18
            G+  PD FT+P+V KAC DLS+I  G  IH
Sbjct: 106 SGRTLPDKFTYPVVIKACGDLSLIDVGVGIH 136


>ref|XP_004154781.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 709

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 51/152 (33%), Positives = 71/152 (46%), Gaps = 21/152 (13%)
 Frame = -1

Query: 395 SNFQTVKTVKLGKLIITNL--------------LMNKPTYYSKHLLTR-----PSNNHGP 273
           SN  T K +   K +I N+               +NK      H +T      P+  H P
Sbjct: 61  SNSNTTKALSKSKSLIANVHRCDSLLRHYAATRSLNKTKILHGHTITSGLLHSPNFIHLP 120

Query: 272 TTTKLNS--CSKYIEARRLFDKLSKRTSPLYNVMIKYYTQHHQPKLALHLFTEMLTLGQH 99
           +   ++   C     AR+LFD LS  +  L+N +IK Y        AL +F  M+  G+ 
Sbjct: 121 SHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKF 180

Query: 98  KPDNFTFPLVFKACSDLSMIKTGETIHCRALM 3
            PD +TFPLV KACS +SM+  G  IH RAL+
Sbjct: 181 WPDKYTFPLVIKACSVMSMLNVGVLIHGRALV 212


>emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 43/116 (37%), Positives = 60/116 (51%)
 Frame = -1

Query: 350 ITNLLMNKPTYYSKHLLTRPSNNHGPTTTKLNSCSKYIEARRLFDKLSKRTSPLYNVMIK 171
           IT  L++ P  YS HLL+  +  +         C     AR+LFD+L   +   +N MI+
Sbjct: 45  ITLGLLSSP--YSHHLLSSLAAAYA-------MCGCAPHARKLFDELRNPSLFSWNAMIR 95

Query: 170 YYTQHHQPKLALHLFTEMLTLGQHKPDNFTFPLVFKACSDLSMIKTGETIHCRALM 3
            YT       AL LF +ML  G+  PDN+T+P V KAC D  + + G  IH R +M
Sbjct: 96  MYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVM 151


>ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 51/152 (33%), Positives = 71/152 (46%), Gaps = 21/152 (13%)
 Frame = -1

Query: 395 SNFQTVKTVKLGKLIITNL--------------LMNKPTYYSKHLLTR-----PSNNHGP 273
           SN  T K +   K +I N+               +NK      H +T      P+  H P
Sbjct: 61  SNSNTTKALSKSKSLIANVHRCDSLLCHYAATRSLNKTKILHGHTITSGLLHSPNFIHLP 120

Query: 272 TTTKLNS--CSKYIEARRLFDKLSKRTSPLYNVMIKYYTQHHQPKLALHLFTEMLTLGQH 99
           +   ++   C     AR+LFD LS  +  L+N +IK Y        AL +F  M+  G+ 
Sbjct: 121 SHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKC 180

Query: 98  KPDNFTFPLVFKACSDLSMIKTGETIHCRALM 3
            PD +TFPLV KACS +SM+  G  IH RAL+
Sbjct: 181 WPDKYTFPLVIKACSVMSMLNVGVLIHGRALV 212


>ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera] gi|296082987|emb|CBI22288.3| unnamed
           protein product [Vitis vinifera]
          Length = 676

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 43/116 (37%), Positives = 63/116 (54%)
 Frame = -1

Query: 350 ITNLLMNKPTYYSKHLLTRPSNNHGPTTTKLNSCSKYIEARRLFDKLSKRTSPLYNVMIK 171
           IT  L++ P  YS HLL+  +  +      +  C+ +  AR+LFD+L   +   +N MI+
Sbjct: 45  ITLGLLSSP--YSHHLLSSLAAAYA-----MFGCAPH--ARKLFDELRNPSLFSWNAMIR 95

Query: 170 YYTQHHQPKLALHLFTEMLTLGQHKPDNFTFPLVFKACSDLSMIKTGETIHCRALM 3
            YT       AL LF +ML  G+  PDN+T+P V KAC D  + + G  IH R +M
Sbjct: 96  MYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACGDYLLPEMGALIHARTVM 151