BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040370
         (491 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containi...   192   2e-47
emb|CBI25851.3| unnamed protein product [Vitis vinifera]              192   2e-47
emb|CAN68810.1| hypothetical protein VITISV_001082 [Vitis vinifera]   192   2e-47
ref|XP_002326464.1| predicted protein [Populus trichocarpa] gi|2...   186   2e-45
ref|XP_002531466.1| pentatricopeptide repeat-containing protein,...   184   5e-45

>ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g47360-like [Vitis vinifera]
          Length = 638

 Score =  192 bits (489), Expect = 2e-47
 Identities = 93/151 (61%), Positives = 114/151 (75%)
 Frame = +1

Query: 22  ISDVLEIYRKEGCLVCVKMFKVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIR 201
           I DV+E YR EG +V VK F V+L+L REAKLA+EAL + +KM EF  R DT ++N VIR
Sbjct: 109 IIDVIEAYRVEGTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIR 168

Query: 202 MFCEKGDMDVVLVLIKEMALIGIYPDMITYIVSIKGFCEVGRLEDASGLVKVMRNQGCVP 381
           +FCEKGDMD+   L+KEM LI +YP+MITY+  IKGFC VGRLEDA  L KVM+  GC P
Sbjct: 169 LFCEKGDMDLAAGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSP 228

Query: 382 NVVAYSALLDGFCKIGDFDKALGLLGEMEKE 474
           NVV Y+ +LDG C+ G  ++AL LLGEMEKE
Sbjct: 229 NVVVYTVILDGVCRFGSLERALELLGEMEKE 259



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
 Frame = +1

Query: 85  VILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIRMFCEKGDMDVVLVLIKEMALI 264
           +I   C   +L  +A  +F+ M+  GC P+   + +++   C  G ++  L L+ EM   
Sbjct: 201 MIKGFCNVGRL-EDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEKE 259

Query: 265 G--IYPDMITYIVSIKGFCEVGRLEDASGLVKVMRNQGCVPNVVAYSALLDGFCKIGDFD 438
                P+++TY   I+  CE G+L +A  ++  MR  GC PN V  S L+ GFC  G  +
Sbjct: 260 SGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAPNRVTVSILMKGFCAEGRVE 319

Query: 439 KALGLLGEM 465
           +A  L+ ++
Sbjct: 320 EAFKLIDKV 328



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
 Frame = +1

Query: 4   FFEIERISDVLEIYRK---EGCLVCVKMFKVILN-LCREAKL--ANEALGVFRKMREFG- 162
           F  + R+ D  ++++     GC   V ++ VIL+ +CR   L  A E LG   K  E G 
Sbjct: 205 FCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEK--ESGD 262

Query: 163 CRPDTTSFNIVIRMFCEKGDMDVVLVLIKEMALIGIYPDMITYIVSIKGFCEVGRLEDAS 342
           C P+  ++  +I+  CEKG +   L ++  M   G  P+ +T  + +KGFC  GR+E+A 
Sbjct: 263 CSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAPNRVTVSILMKGFCAEGRVEEAF 322

Query: 343 GLVKVMRNQGCVPNVVAYSALL 408
            L+  +   G V     YS+L+
Sbjct: 323 KLIDKVVAGGNVSYGECYSSLI 344


>emb|CBI25851.3| unnamed protein product [Vitis vinifera]
          Length = 528

 Score =  192 bits (489), Expect = 2e-47
 Identities = 93/151 (61%), Positives = 114/151 (75%)
 Frame = +1

Query: 22  ISDVLEIYRKEGCLVCVKMFKVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIR 201
           I DV+E YR EG +V VK F V+L+L REAKLA+EAL + +KM EF  R DT ++N VIR
Sbjct: 115 IIDVIEAYRVEGTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIR 174

Query: 202 MFCEKGDMDVVLVLIKEMALIGIYPDMITYIVSIKGFCEVGRLEDASGLVKVMRNQGCVP 381
           +FCEKGDMD+   L+KEM LI +YP+MITY+  IKGFC VGRLEDA  L KVM+  GC P
Sbjct: 175 LFCEKGDMDLAAGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSP 234

Query: 382 NVVAYSALLDGFCKIGDFDKALGLLGEMEKE 474
           NVV Y+ +LDG C+ G  ++AL LLGEMEKE
Sbjct: 235 NVVVYTVILDGVCRFGSLERALELLGEMEKE 265



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
 Frame = +1

Query: 85  VILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIRMFCEKGDMDVVLVLIKEMALI 264
           +I   C   +L  +A  +F+ M+  GC P+   + +++   C  G ++  L L+ EM   
Sbjct: 207 MIKGFCNVGRL-EDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEKE 265

Query: 265 G--IYPDMITYIVSIKGFCEVGRLEDASGLVKVMRNQGCVPNVVAYSALLDGFCKIGDFD 438
                P+++TY   I+  CE G+L +A  ++  MR  GC PN V  S L+ GFC  G  +
Sbjct: 266 SGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAPNRVTVSILMKGFCAEGRVE 325

Query: 439 KALGLLGEM 465
           +A  L+ ++
Sbjct: 326 EAFKLIDKV 334



 Score = 62.8 bits (151), Expect = 3e-08
 Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 7/142 (4%)
 Frame = +1

Query: 4   FFEIERISDVLEIYRK---EGCLVCVKMFKVILN-LCREAKL--ANEALGVFRKMREFG- 162
           F  + R+ D  ++++     GC   V ++ VIL+ +CR   L  A E LG   K  E G 
Sbjct: 211 FCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEK--ESGD 268

Query: 163 CRPDTTSFNIVIRMFCEKGDMDVVLVLIKEMALIGIYPDMITYIVSIKGFCEVGRLEDAS 342
           C P+  ++  +I+  CEKG +   L ++  M   G  P+ +T  + +KGFC  GR+E+A 
Sbjct: 269 CSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAPNRVTVSILMKGFCAEGRVEEAF 328

Query: 343 GLVKVMRNQGCVPNVVAYSALL 408
            L+  +   G V     YS+L+
Sbjct: 329 KLIDKVVAGGNVSYGECYSSLI 350


>emb|CAN68810.1| hypothetical protein VITISV_001082 [Vitis vinifera]
          Length = 577

 Score =  192 bits (489), Expect = 2e-47
 Identities = 93/151 (61%), Positives = 114/151 (75%)
 Frame = +1

Query: 22  ISDVLEIYRKEGCLVCVKMFKVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIR 201
           I DV+E YR EG +V VK F V+L+L REAKLA+EAL + +KM EF  R DT ++N VIR
Sbjct: 109 IIDVIEAYRVEGTVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIR 168

Query: 202 MFCEKGDMDVVLVLIKEMALIGIYPDMITYIVSIKGFCEVGRLEDASGLVKVMRNQGCVP 381
           +FCEKGDMD+   L+KEM LI +YP+MITY+  IKGFC VGRLEDA  L KVM+  GC P
Sbjct: 169 LFCEKGDMDLAAGLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSP 228

Query: 382 NVVAYSALLDGFCKIGDFDKALGLLGEMEKE 474
           NVV Y+ +LDG C+ G  ++AL LLGEMEKE
Sbjct: 229 NVVVYTVILDGVCRFGSLERALELLGEMEKE 259



 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 39/129 (30%), Positives = 67/129 (51%), Gaps = 2/129 (1%)
 Frame = +1

Query: 85  VILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIRMFCEKGDMDVVLVLIKEMALI 264
           +I   C   +L  +A  +F+ M+  GC P+   + +++   C  G ++  L L+ EM   
Sbjct: 201 MIKGFCNVGRL-EDACKLFKVMKGHGCSPNVVVYTVILDGVCRFGSLERALELLGEMEKE 259

Query: 265 G--IYPDMITYIVSIKGFCEVGRLEDASGLVKVMRNQGCVPNVVAYSALLDGFCKIGDFD 438
                P+++TY   I+  CE G+L +A  ++  MR  GC PN V  S L+ GFC  G  +
Sbjct: 260 SGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAPNRVTVSILMKGFCAEGRVE 319

Query: 439 KALGLLGEM 465
           +A  L+ ++
Sbjct: 320 EAFKLIDKV 328


>ref|XP_002326464.1| predicted protein [Populus trichocarpa] gi|222833786|gb|EEE72263.1|
           predicted protein [Populus trichocarpa]
          Length = 476

 Score =  186 bits (472), Expect = 2e-45
 Identities = 90/154 (58%), Positives = 112/154 (72%)
 Frame = +1

Query: 22  ISDVLEIYRKEGCLVCVKMFKVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIR 201
           I D++E Y+ E C+VCV  FKV+L LC+   LA+EAL V +KM EF  RPDTT++N+VIR
Sbjct: 114 ILDLIETYKLEKCVVCVDTFKVVLRLCKAGGLADEALMVLKKMPEFNIRPDTTAYNVVIR 173

Query: 202 MFCEKGDMDVVLVLIKEMALIGIYPDMITYIVSIKGFCEVGRLEDASGLVKVMRNQGCVP 381
             CEKGD+D+   L+ EM LI +YPDMITY+  IKGFC+VGRLE+A  L  VM   GC P
Sbjct: 174 SLCEKGDVDMAKKLMGEMGLIDLYPDMITYVSMIKGFCDVGRLEEAFALFPVMSVHGCYP 233

Query: 382 NVVAYSALLDGFCKIGDFDKALGLLGEMEKEENG 483
           NVVAYSALLDG C+ G  ++A  LL EMEK+  G
Sbjct: 234 NVVAYSALLDGICRFGIVERAFELLAEMEKQGEG 267


>ref|XP_002531466.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528920|gb|EEF30916.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 518

 Score =  184 bits (468), Expect = 5e-45
 Identities = 87/153 (56%), Positives = 113/153 (73%)
 Frame = +1

Query: 16  ERISDVLEIYRKEGCLVCVKMFKVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIV 195
           + + D+ E YR E C+V +K FKV+LNLC+E  LANEA  V RKM+EF  + DT ++ IV
Sbjct: 110 QAVLDLFEFYRAEKCVVNLKTFKVVLNLCKEGTLANEAFLVLRKMQEFDIQADTKAYTIV 169

Query: 196 IRMFCEKGDMDVVLVLIKEMALIGIYPDMITYIVSIKGFCEVGRLEDASGLVKVMRNQGC 375
           IR+FC+KGDMD+   L+ EM+   +YPDM+TY+  IKGFC++GRLE+A  LVK MR  GC
Sbjct: 170 IRLFCDKGDMDMAQKLMGEMSFNDLYPDMVTYVSIIKGFCDIGRLEEACRLVKEMRAHGC 229

Query: 376 VPNVVAYSALLDGFCKIGDFDKALGLLGEMEKE 474
           VPNVV YS L+DG C+ G  ++AL LLG MEKE
Sbjct: 230 VPNVVVYSTLVDGICRFGSVERALELLGGMEKE 262