BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040367
         (530 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI22748.3| unnamed protein product [Vitis vinifera]              167   7e-40
ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containi...   167   7e-40
ref|XP_002510791.1| pentatricopeptide repeat-containing protein,...   167   7e-40
ref|XP_004157226.1| PREDICTED: pentatricopeptide repeat-containi...   162   4e-38
gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]              161   6e-38

>emb|CBI22748.3| unnamed protein product [Vitis vinifera]
          Length = 518

 Score =  167 bits (424), Expect = 7e-40
 Identities = 81/146 (55%), Positives = 108/146 (73%), Gaps = 6/146 (4%)
 Frame = +2

Query: 107 KPIGDDTLLGVSSQLSDDDEQNDTG------ESFSPRRRFFEDVRFSVDRVIEVLQQDGP 268
           KP+ +   +     +SD++  +D G        F   + +F+++R    RV+++LQQD P
Sbjct: 74  KPLSEAWGVSNFDPVSDENPDSDNGIGSSSPAEFLAGKGYFDNMRLDASRVLQILQQDCP 133

Query: 269 GFDTKLALDELRLRVSNYLVREVLIRVLKSIHHSNKSRCAKLGYKFFVWSGQQVNYRYTS 448
           GF TK ALDEL++RVS  LVREVL+ +LK+++++NK RCAKLGYKFF+WSGQQ NYR+T 
Sbjct: 134 GFSTKAALDELQIRVSGGLVREVLLEILKTVNYTNKERCAKLGYKFFMWSGQQENYRHTV 193

Query: 449 NAYHLIMKIFAECEEFKAMWRLVDEM 526
           NAYHLIMKIFAE +EFKAMWRLVDEM
Sbjct: 194 NAYHLIMKIFAESDEFKAMWRLVDEM 219


>ref|XP_002268211.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Vitis vinifera]
          Length = 514

 Score =  167 bits (424), Expect = 7e-40
 Identities = 81/146 (55%), Positives = 108/146 (73%), Gaps = 6/146 (4%)
 Frame = +2

Query: 107 KPIGDDTLLGVSSQLSDDDEQNDTG------ESFSPRRRFFEDVRFSVDRVIEVLQQDGP 268
           KP+ +   +     +SD++  +D G        F   + +F+++R    RV+++LQQD P
Sbjct: 70  KPLSEAWGVSNFDPVSDENPDSDNGIGSSSPAEFLAGKGYFDNMRLDASRVLQILQQDCP 129

Query: 269 GFDTKLALDELRLRVSNYLVREVLIRVLKSIHHSNKSRCAKLGYKFFVWSGQQVNYRYTS 448
           GF TK ALDEL++RVS  LVREVL+ +LK+++++NK RCAKLGYKFF+WSGQQ NYR+T 
Sbjct: 130 GFSTKAALDELQIRVSGGLVREVLLEILKTVNYTNKERCAKLGYKFFMWSGQQENYRHTV 189

Query: 449 NAYHLIMKIFAECEEFKAMWRLVDEM 526
           NAYHLIMKIFAE +EFKAMWRLVDEM
Sbjct: 190 NAYHLIMKIFAESDEFKAMWRLVDEM 215


>ref|XP_002510791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223549906|gb|EEF51393.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 475

 Score =  167 bits (424), Expect = 7e-40
 Identities = 91/178 (51%), Positives = 114/178 (64%), Gaps = 3/178 (1%)
 Frame = +2

Query: 2   KFRVIL---RSMCSASGKDNGGKNGYEENLDLDSTLDWKPIGDDTLLGVSSQLSDDDEQN 172
           KF  IL   R +C  S   +   NG+    +    L WK          +S       +N
Sbjct: 14  KFSYILVFSRKLCDCSFDGDKSDNGFRYIEEPLKRL-WK----------NSDFGSCGSEN 62

Query: 173 DTGESFSPRRRFFEDVRFSVDRVIEVLQQDGPGFDTKLALDELRLRVSNYLVREVLIRVL 352
               ++S R+ FFE+VR    RV+++L+QDGPGFD K AL EL LRVS  LVREVL  +L
Sbjct: 63  RDNGNYSQRKWFFENVRIDAARVLDILRQDGPGFDAKAALSELDLRVSGLLVREVLAGIL 122

Query: 353 KSIHHSNKSRCAKLGYKFFVWSGQQVNYRYTSNAYHLIMKIFAECEEFKAMWRLVDEM 526
           ++I   NK+RCAKLGYKFF+WS QQ NYR+T+N YHLIMKIFA+CEEFKAMWRL+DEM
Sbjct: 123 RNIGIDNKTRCAKLGYKFFIWSSQQENYRHTANNYHLIMKIFADCEEFKAMWRLLDEM 180


>ref|XP_004157226.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g55630-like [Cucumis sativus]
          Length = 476

 Score =  162 bits (409), Expect = 4e-38
 Identities = 77/123 (62%), Positives = 97/123 (78%)
 Frame = +2

Query: 161 DEQNDTGESFSPRRRFFEDVRFSVDRVIEVLQQDGPGFDTKLALDELRLRVSNYLVREVL 340
           +  N   + FS RR F +D +   ++VIE+L+QDGPGFDT LALDEL+L+VS  LV EVL
Sbjct: 56  ETDNRRWDDFSLRRSFLKDAKIDAEKVIEILKQDGPGFDTFLALDELQLKVSGVLVGEVL 115

Query: 341 IRVLKSIHHSNKSRCAKLGYKFFVWSGQQVNYRYTSNAYHLIMKIFAECEEFKAMWRLVD 520
             +LKS    NK++CAKLGYKFF+WSG+  NYR+T N+YH+IMKIFAECEEFKAMWR++D
Sbjct: 116 KGILKSKSVLNKTQCAKLGYKFFIWSGRIENYRHTVNSYHIIMKIFAECEEFKAMWRVLD 175

Query: 521 EMT 529
           EMT
Sbjct: 176 EMT 178


>gb|AAF79508.1|AC002328_16 F20N2.6 [Arabidopsis thaliana]
          Length = 554

 Score =  161 bits (407), Expect = 6e-38
 Identities = 83/175 (47%), Positives = 112/175 (64%)
 Frame = +2

Query: 2   KFRVILRSMCSASGKDNGGKNGYEENLDLDSTLDWKPIGDDTLLGVSSQLSDDDEQNDTG 181
           +F    R  C+ S   +   NG EE L +     W+          SS++  + +Q + G
Sbjct: 95  RFLFTSRKFCNGSIGGDVTDNGTEEPLKIT----WE----------SSEMDCEFDQEENG 140

Query: 182 ESFSPRRRFFEDVRFSVDRVIEVLQQDGPGFDTKLALDELRLRVSNYLVREVLIRVLKSI 361
           E  S R+RF E  + S  RV++ LQQD PGF+TK ALDEL + +S  LVREVL+ +L+++
Sbjct: 141 EKISVRKRFMESTKLSASRVLDTLQQDCPGFNTKSALDELNVSISGLLVREVLVGILRTL 200

Query: 362 HHSNKSRCAKLGYKFFVWSGQQVNYRYTSNAYHLIMKIFAECEEFKAMWRLVDEM 526
              NK+RCAKL YKFFVW G Q N+R+T+N YHL+MKIFAEC E+KAM RL+DEM
Sbjct: 201 SFDNKTRCAKLAYKFFVWCGGQENFRHTANCYHLLMKIFAECGEYKAMCRLIDEM 255