BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040364
         (370 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003624391.1| Pentatricopeptide repeat-containing protein ...   151   6e-35
ref|XP_004137635.1| PREDICTED: pentatricopeptide repeat-containi...   142   3e-32
ref|XP_004161848.1| PREDICTED: pentatricopeptide repeat-containi...   140   8e-32
ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containi...   137   7e-31
ref|XP_002448768.1| hypothetical protein SORBIDRAFT_06g032835 [S...   115   3e-24

>ref|XP_003624391.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355499406|gb|AES80609.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 709

 Score =  151 bits (381), Expect = 6e-35
 Identities = 70/119 (58%), Positives = 88/119 (73%)
 Frame = -1

Query: 370 VDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGVPKKALEVVEEMKSMGVRPNK 191
           VDMYLK++KL++G KAF E+P +DV SWT+MA GCLQ G P+ AL V+ +MK MGV+PNK
Sbjct: 249 VDMYLKNQKLEEGFKAFDEIPHKDVCSWTQMADGCLQWGEPRMALAVIAKMKKMGVKPNK 308

Query: 190 FXXXXXXXXXXXXXXLEDGKKAHGLRIKLGDKVDVCVENALLDMYSKCGYVDGAWTAFQ 14
           F              +E+GK+ HGLRIKLG  VDVCV+NALLDMY+KCG +D AWT F+
Sbjct: 309 FTLATALNACACLASMEEGKQFHGLRIKLGSDVDVCVDNALLDMYAKCGCMDSAWTVFR 367


>ref|XP_004137635.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score =  142 bits (358), Expect = 3e-32
 Identities = 71/122 (58%), Positives = 86/122 (70%)
 Frame = -1

Query: 367 DMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGVPKKALEVVEEMKSMGVRPNKF 188
           DMY+K++KL DG KAF EM   DV SWT+MA+GCLQCG P KALEV+ EMK++GVR NKF
Sbjct: 460 DMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALEVIYEMKNVGVRLNKF 519

Query: 187 XXXXXXXXXXXXXXLEDGKKAHGLRIKLGDKVDVCVENALLDMYSKCGYVDGAWTAFQLM 8
                         +E+GKK HGLRIKLG  VDVCV+NALLDMY+KCG +  A   F+ M
Sbjct: 520 TLATALNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSM 579

Query: 7   KD 2
            +
Sbjct: 580 DE 581


>ref|XP_004161848.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 769

 Score =  140 bits (354), Expect = 8e-32
 Identities = 70/122 (57%), Positives = 86/122 (70%)
 Frame = -1

Query: 367 DMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGVPKKALEVVEEMKSMGVRPNKF 188
           DMY+K++KL DG KAF EM   DV SWT+MA+GCLQCG P KAL+V+ EMK++GVR NKF
Sbjct: 460 DMYVKNQKLLDGFKAFDEMSSSDVCSWTQMAAGCLQCGEPMKALKVIYEMKNVGVRLNKF 519

Query: 187 XXXXXXXXXXXXXXLEDGKKAHGLRIKLGDKVDVCVENALLDMYSKCGYVDGAWTAFQLM 8
                         +E+GKK HGLRIKLG  VDVCV+NALLDMY+KCG +  A   F+ M
Sbjct: 520 TLATALNSCANLASIEEGKKFHGLRIKLGTDVDVCVDNALLDMYAKCGCMTSANVVFRSM 579

Query: 7   KD 2
            +
Sbjct: 580 DE 581


>ref|XP_002267777.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070
           [Vitis vinifera] gi|296087996|emb|CBI35279.3| unnamed
           protein product [Vitis vinifera]
          Length = 598

 Score =  137 bits (346), Expect = 7e-31
 Identities = 68/118 (57%), Positives = 83/118 (70%)
 Frame = -1

Query: 370 VDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGVPKKALEVVEEMKSMGVRPNK 191
           VDMYLK   L++G+KAF EM  RDV +W +MA+GCL CG P +ALE++EEM+  GVR NK
Sbjct: 291 VDMYLKCGSLENGIKAFEEMVERDVCTWNQMAAGCLNCGKPGRALELIEEMRRSGVRMNK 350

Query: 190 FXXXXXXXXXXXXXXLEDGKKAHGLRIKLGDKVDVCVENALLDMYSKCGYVDGAWTAF 17
           F              LE+GKKAHGLRIKLG+ VDVCV+NALLDMY+KCG +  A   F
Sbjct: 351 FTLATALTACANLASLEEGKKAHGLRIKLGNDVDVCVDNALLDMYAKCGSMGDALKVF 408



 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 36/119 (30%), Positives = 58/119 (48%), Gaps = 2/119 (1%)
 Frame = -1

Query: 358 LKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQ--CGVPKKALEVVEEMKSMGVRPNKFX 185
           ++S+KL + L+ F     +DV+SW  + +G +Q  CG   +       M   GV+P+ F 
Sbjct: 195 IRSRKLAEALEVFEACRGKDVVSWNAVMAGLVQFCCG---EVPGFWRRMCCEGVKPDNFA 251

Query: 184 XXXXXXXXXXXXXLEDGKKAHGLRIKLGDKVDVCVENALLDMYSKCGYVDGAWTAFQLM 8
                           G + HG  +K G   +VC+ N+L+DMY KCG ++    AF+ M
Sbjct: 252 FSGVLSGLAALGDGGMGVQVHGQLVKCGHGGEVCIGNSLVDMYLKCGSLENGIKAFEEM 310



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 26/59 (44%), Positives = 35/59 (59%)
 Frame = -1

Query: 370 VDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGVPKKALEVVEEMKSMGVRPN 194
           +DMY K   + D LK F  +  R V+SWT M  G  Q G  +KALE+ E+M++ G  PN
Sbjct: 392 LDMYAKCGSMGDALKVFGTVEARSVVSWTTMIMGFAQNGQARKALEIFEQMRAEGKAPN 450


>ref|XP_002448768.1| hypothetical protein SORBIDRAFT_06g032835 [Sorghum bicolor]
           gi|241939951|gb|EES13096.1| hypothetical protein
           SORBIDRAFT_06g032835 [Sorghum bicolor]
          Length = 598

 Score =  115 bits (289), Expect = 3e-24
 Identities = 58/122 (47%), Positives = 77/122 (63%)
 Frame = -1

Query: 370 VDMYLKSKKLDDGLKAFSEMPFRDVISWTEMASGCLQCGVPKKALEVVEEMKSMGVRPNK 191
           V+MY+KSK L DG  AF+E+  +DV+SWT MA+GCL CG P KA+ ++ +M   GV PN 
Sbjct: 286 VEMYMKSKCLADGTMAFAEIRCKDVVSWTGMAAGCLHCGEPSKAIGILSQMMLDGVMPNS 345

Query: 190 FXXXXXXXXXXXXXXLEDGKKAHGLRIKLGDKVDVCVENALLDMYSKCGYVDGAWTAFQL 11
           +              L++G+K HG  IKLGD  D+ V NAL+DMY+KCG V  A   FQ 
Sbjct: 346 YTFATSANACASLTDLDEGRKVHGYVIKLGDDSDIGVNNALIDMYAKCGSVACAHKVFQS 405

Query: 10  MK 5
           M+
Sbjct: 406 MQ 407