BLASTX nr result
ID: Coptis25_contig00040344
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00040344
(753 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containi... 216 4e-54
emb|CBI15198.3| unnamed protein product [Vitis vinifera] 216 4e-54
emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera] 214 2e-53
ref|XP_002514728.1| pentatricopeptide repeat-containing protein,... 181 1e-43
ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containi... 146 5e-33
>ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Vitis vinifera]
Length = 665
Score = 216 bits (550), Expect = 4e-54
Identities = 111/198 (56%), Positives = 145/198 (73%)
Frame = -1
Query: 594 NPSHLVITNILNSTSVSEALTIFKSSSNQINLKKYPQVYSAIIHVVTKAKLYMEAKCLTK 415
+PS L +IL + ++AL +F S S + +L K PQ+YSAIIHV+T AKLY +A+CL +
Sbjct: 36 SPSSLP-NSILTCRTANQALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMR 94
Query: 414 DLIQILHNTQKQTPIGFLAFNTLGNVDSSKFSHNVFDVLLIAFSQMGLVDEACWVYYKVK 235
DLIQ L N+++ I FN L ++SSKF+ NVF VL+IAFS+MGLV+EA WVYYK+
Sbjct: 95 DLIQCLQNSRRSR-ICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMD 153
Query: 234 VLPAIPACNSLLNGFVKMGRFNSMWEIYGDMKRRGVVANVVTYSTLINACCNQGDIVKAR 55
VLPA+ ACN +L+G VK GRF++MW++YGDM RG NVVTY TLI+ CC QGD +KA
Sbjct: 154 VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAF 213
Query: 54 VLFEEMVEKGIKPRVVTY 1
LF+EM+EK I P VV Y
Sbjct: 214 RLFDEMIEKKIFPTVVIY 231
Score = 68.2 bits (165), Expect = 2e-09
Identities = 52/221 (23%), Positives = 104/221 (47%), Gaps = 27/221 (12%)
Frame = -1
Query: 582 LVITNILNSTSVSEALTIFKSSSNQ---INLKKYPQV---YSAIIHVVTKAKLYME---- 433
++I + + +SEA ++F++ N NL Y + Y I HV +LY E
Sbjct: 233 ILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGD 292
Query: 432 --------------AKCLTKDLIQILHNTQKQTPIGFLAFNTLGNVDSSKFSHNVFDVLL 295
C T +++ + ++ I +F + N+ V++ L+
Sbjct: 293 GLLPNVVTFGILIDGLCKTDEMV-----SARKFLIDMASFGVVPNIF-------VYNCLI 340
Query: 294 IAFSQMGLVDEACWVYYKVK---VLPAIPACNSLLNGFVKMGRFNSMWEIYGDMKRRGVV 124
+ + G + EA ++ +++ +LP + + L+ G + R + +MK++G +
Sbjct: 341 DGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFL 400
Query: 123 ANVVTYSTLINACCNQGDIVKARVLFEEMVEKGIKPRVVTY 1
N VTY+TLI+ C +G++ KA + +M EKGI+P ++T+
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITF 441
>emb|CBI15198.3| unnamed protein product [Vitis vinifera]
Length = 948
Score = 216 bits (550), Expect = 4e-54
Identities = 111/198 (56%), Positives = 145/198 (73%)
Frame = -1
Query: 594 NPSHLVITNILNSTSVSEALTIFKSSSNQINLKKYPQVYSAIIHVVTKAKLYMEAKCLTK 415
+PS L +IL + ++AL +F S S + +L K PQ+YSAIIHV+T AKLY +A+CL +
Sbjct: 36 SPSSLP-NSILTCRTANQALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMR 94
Query: 414 DLIQILHNTQKQTPIGFLAFNTLGNVDSSKFSHNVFDVLLIAFSQMGLVDEACWVYYKVK 235
DLIQ L N+++ I FN L ++SSKF+ NVF VL+IAFS+MGLV+EA WVYYK+
Sbjct: 95 DLIQCLQNSRRSR-ICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMD 153
Query: 234 VLPAIPACNSLLNGFVKMGRFNSMWEIYGDMKRRGVVANVVTYSTLINACCNQGDIVKAR 55
VLPA+ ACN +L+G VK GRF++MW++YGDM RG NVVTY TLI+ CC QGD +KA
Sbjct: 154 VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAF 213
Query: 54 VLFEEMVEKGIKPRVVTY 1
LF+EM+EK I P VV Y
Sbjct: 214 RLFDEMIEKKIFPTVVIY 231
Score = 68.2 bits (165), Expect = 2e-09
Identities = 52/221 (23%), Positives = 104/221 (47%), Gaps = 27/221 (12%)
Frame = -1
Query: 582 LVITNILNSTSVSEALTIFKSSSNQ---INLKKYPQV---YSAIIHVVTKAKLYME---- 433
++I + + +SEA ++F++ N NL Y + Y I HV +LY E
Sbjct: 233 ILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGD 292
Query: 432 --------------AKCLTKDLIQILHNTQKQTPIGFLAFNTLGNVDSSKFSHNVFDVLL 295
C T +++ + ++ I +F + N+ V++ L+
Sbjct: 293 GLLPNVVTFGILIDGLCKTDEMV-----SARKFLIDMASFGVVPNIF-------VYNCLI 340
Query: 294 IAFSQMGLVDEACWVYYKVK---VLPAIPACNSLLNGFVKMGRFNSMWEIYGDMKRRGVV 124
+ + G + EA ++ +++ +LP + + L+ G + R + +MK++G +
Sbjct: 341 DGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFL 400
Query: 123 ANVVTYSTLINACCNQGDIVKARVLFEEMVEKGIKPRVVTY 1
N VTY+TLI+ C +G++ KA + +M EKGI+P ++T+
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITF 441
>emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
Length = 1060
Score = 214 bits (544), Expect = 2e-53
Identities = 110/198 (55%), Positives = 144/198 (72%)
Frame = -1
Query: 594 NPSHLVITNILNSTSVSEALTIFKSSSNQINLKKYPQVYSAIIHVVTKAKLYMEAKCLTK 415
+PS L +IL + ++AL +F S S + +L K PQ+YSAIIHV+T AKLY +A+CL +
Sbjct: 36 SPSSLP-NSILTCRTANQALELFHSVSRRADLAKNPQLYSAIIHVLTGAKLYAKARCLMR 94
Query: 414 DLIQILHNTQKQTPIGFLAFNTLGNVDSSKFSHNVFDVLLIAFSQMGLVDEACWVYYKVK 235
DLIQ L +++ I FN L ++SSKF+ NVF VL+IAFS+MGLV+EA WVYYK+
Sbjct: 95 DLIQCLQKSRRSR-ICCSVFNVLSRLESSKFTPNVFGVLIIAFSEMGLVEEALWVYYKMD 153
Query: 234 VLPAIPACNSLLNGFVKMGRFNSMWEIYGDMKRRGVVANVVTYSTLINACCNQGDIVKAR 55
VLPA+ ACN +L+G VK GRF++MW++YGDM RG NVVTY TLI+ CC QGD +KA
Sbjct: 154 VLPAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAF 213
Query: 54 VLFEEMVEKGIKPRVVTY 1
LF+EM+EK I P VV Y
Sbjct: 214 RLFDEMIEKKIFPTVVIY 231
Score = 67.8 bits (164), Expect = 2e-09
Identities = 52/221 (23%), Positives = 104/221 (47%), Gaps = 27/221 (12%)
Frame = -1
Query: 582 LVITNILNSTSVSEALTIFKSSSNQ---INLKKYPQV---YSAIIHVVTKAKLYME---- 433
++I + + +SEA ++F++ N NL Y + Y I HV +LY E
Sbjct: 233 ILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCKIAHVKKALELYXEMLGD 292
Query: 432 --------------AKCLTKDLIQILHNTQKQTPIGFLAFNTLGNVDSSKFSHNVFDVLL 295
C T +++ + ++ I +F + N+ V++ L+
Sbjct: 293 GLLPNVVTFGILIDGLCKTDEMV-----SARKFLIDMASFGVVPNIF-------VYNCLI 340
Query: 294 IAFSQMGLVDEACWVYYKVK---VLPAIPACNSLLNGFVKMGRFNSMWEIYGDMKRRGVV 124
+ + G + EA ++ +++ +LP + + L+ G + R + +MK++G +
Sbjct: 341 DGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFL 400
Query: 123 ANVVTYSTLINACCNQGDIVKARVLFEEMVEKGIKPRVVTY 1
N VTY+TLI+ C +G++ KA + +M EKGI+P ++T+
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITF 441
Score = 60.8 bits (146), Expect = 3e-07
Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Frame = -1
Query: 309 FDVLLIAFSQMGLVDEACWVYYKVK---VLPAIPACNSLLNGFVKMGRFNSMWEIYGDMK 139
+ +L+ + ++EA + ++K LP N+L++G+ K G E+ M
Sbjct: 371 YSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMT 430
Query: 138 RRGVVANVVTYSTLINACCNQGDIVKARVLFEEMVEKGIKPRVVTY 1
+G+ N++T+STLI+ C G + A L+ EMV KG+ P VV Y
Sbjct: 431 EKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAY 476
>ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223546332|gb|EEF47834.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 517
Score = 181 bits (459), Expect = 1e-43
Identities = 98/199 (49%), Positives = 130/199 (65%), Gaps = 2/199 (1%)
Frame = -1
Query: 591 PSHLVITNILNSTSVSEALTIFKS--SSNQINLKKYPQVYSAIIHVVTKAKLYMEAKCLT 418
PS L T IL+S + +AL F S N N K +YSA+IH +T AK+Y A+CLT
Sbjct: 27 PSDLT-TIILHSKTPEQALDTFTSVLKQNPNNPTKKLHLYSAVIHYLTGAKVYPTARCLT 85
Query: 417 KDLIQILHNTQKQTPIGFLAFNTLGNVDSSKFSHNVFDVLLIAFSQMGLVDEACWVYYKV 238
KDLIQ L + + L FN L + SKF+ +VF VL+IAFS++GLVDEA VY KV
Sbjct: 86 KDLIQTLLQSCTPRRVNSLVFNALSQLRGSKFNPSVFGVLIIAFSEVGLVDEALRVYLKV 145
Query: 237 KVLPAIPACNSLLNGFVKMGRFNSMWEIYGDMKRRGVVANVVTYSTLINACCNQGDIVKA 58
PA+ ACN+LLNG +K F+ MWE+Y +M R + VVTY+ L++ACC QGD+++A
Sbjct: 146 GAFPAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRA 205
Query: 57 RVLFEEMVEKGIKPRVVTY 1
+ L EMV+KGI+P VV Y
Sbjct: 206 KSLISEMVKKGIEPTVVIY 224
>ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Cucumis sativus]
Length = 645
Score = 146 bits (368), Expect = 5e-33
Identities = 82/193 (42%), Positives = 117/193 (60%)
Frame = -1
Query: 579 VITNILNSTSVSEALTIFKSSSNQINLKKYPQVYSAIIHVVTKAKLYMEAKCLTKDLIQI 400
+IT +LN S +AL F ++ +K Q+YSAIIHV+ +KL A+ L DL+Q
Sbjct: 33 LITTVLNCRSPWKALEFFNAAP-----EKNIQLYSAIIHVLVGSKLLSHARYLLNDLVQN 87
Query: 399 LHNTQKQTPIGFLAFNTLGNVDSSKFSHNVFDVLLIAFSQMGLVDEACWVYYKVKVLPAI 220
L + K LAF+ L + SSKF+ NV+ L+I +M LV+EA +Y+KV I
Sbjct: 88 LVKSHKPYHACQLAFSELSRLKSSKFTPNVYGELIIVLCKMELVEEALSMYHKVGAALTI 147
Query: 219 PACNSLLNGFVKMGRFNSMWEIYGDMKRRGVVANVVTYSTLINACCNQGDIVKARVLFEE 40
ACN LL VK GRF +W IY +M G+ +V+T+ TLI+ CC QGD+++A+ +F+E
Sbjct: 148 QACNVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDE 207
Query: 39 MVEKGIKPRVVTY 1
M KGI P V+ Y
Sbjct: 208 MRVKGIVPTVIVY 220
Score = 67.0 bits (162), Expect = 4e-09
Identities = 33/107 (30%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Frame = -1
Query: 312 VFDVLLIAFSQMGLVDEACWVYYKVK---VLPAIPACNSLLNGFVKMGRFNSMWEIYGDM 142
V++ L+ A+ ++G V EA ++ +++ V P + + L+ G + R I+ M
Sbjct: 324 VYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKM 383
Query: 141 KRRGVVANVVTYSTLINACCNQGDIVKARVLFEEMVEKGIKPRVVTY 1
+ G++AN VTY++LI+ CC +G + KA + +M E G++P V+T+
Sbjct: 384 TKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITF 430
Score = 58.5 bits (140), Expect = 1e-06
Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Frame = -1
Query: 309 FDVLLIAFSQMGLVDEACWVYYKVK---VLPAIPACNSLLNGFVKMGRFNSMWEIYGDMK 139
+ +L+ + +EA ++ K+ +L NSL++G K G+ + EI M
Sbjct: 360 YSILIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMT 419
Query: 138 RRGVVANVVTYSTLINACCNQGDIVKARVLFEEMVEKGIKPRVVTY 1
GV NV+T+STLI+ C ++ A ++ EMV K + P VVTY
Sbjct: 420 ENGVEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTY 465