BLASTX nr result
ID: Coptis25_contig00040338
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00040338
(280 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [S... 129 2e-28
ref|XP_002536106.1| pentatricopeptide repeat-containing protein,... 125 4e-27
ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containi... 124 6e-27
tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea m... 123 1e-26
ref|XP_002310592.1| predicted protein [Populus trichocarpa] gi|2... 122 3e-26
>ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
gi|241917662|gb|EER90806.1| hypothetical protein
SORBIDRAFT_01g006560 [Sorghum bicolor]
Length = 803
Score = 129 bits (324), Expect = 2e-28
Identities = 62/90 (68%), Positives = 73/90 (81%)
Frame = +1
Query: 7 IPVANSVLNMYGKSGDAETAKVVFGTMKLKSISSWNAMISLYTQSGRLDLALAQFEQMEE 186
+PVANSVL MYGK GDAETA+ VF MK++S SSWNAM+SLYT GR+DLAL+ FE MEE
Sbjct: 198 VPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEE 257
Query: 187 RDAISWNSMIAGYNQNGSDFEALLFFLKML 276
R +SWN++IAGYNQNG D AL FF +ML
Sbjct: 258 RSIVSWNAIIAGYNQNGLDDMALKFFSRML 287
Score = 60.1 bits (144), Expect = 2e-07
Identities = 30/90 (33%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Frame = +1
Query: 13 VANSVLNMYGKSGDAETAKVVFGTMKLKSIS--SWNAMISLYTQSGRLDLALAQFEQMEE 186
+ N++++ Y KSG ETA+ + + ++ S+ A++ Y + G A F+ M
Sbjct: 333 IMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNN 392
Query: 187 RDAISWNSMIAGYNQNGSDFEALLFFLKML 276
RD I+W +MI GY QNG + EA+ F M+
Sbjct: 393 RDVIAWTAMIVGYEQNGQNDEAMELFRSMI 422
Score = 59.7 bits (143), Expect = 2e-07
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 6/94 (6%)
Frame = +1
Query: 13 VANSVLNMYGKSGDAE----TAKVVFGTMKL--KSISSWNAMISLYTQSGRLDLALAQFE 174
+ N++L+ Y ++G A+ +F + ++ +WN+++S+Y +SGRL A F
Sbjct: 62 LCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSLLSMYAKSGRLADARVVFA 121
Query: 175 QMEERDAISWNSMIAGYNQNGSDFEALLFFLKML 276
QM ERDA+SW M+ G N+ G ++A+ FL M+
Sbjct: 122 QMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMV 155
>ref|XP_002536106.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223520840|gb|EEF26277.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 519
Score = 125 bits (314), Expect = 4e-27
Identities = 60/92 (65%), Positives = 73/92 (79%)
Frame = +1
Query: 1 GYIPVANSVLNMYGKSGDAETAKVVFGTMKLKSISSWNAMISLYTQSGRLDLALAQFEQM 180
G +PVANS+LNMY K+GD+ AK+VF M+L+SISSWN MISL+ GR DLALAQFEQM
Sbjct: 105 GCVPVANSLLNMYAKAGDSVMAKIVFDRMRLRSISSWNIMISLHMHGGRADLALAQFEQM 164
Query: 181 EERDAISWNSMIAGYNQNGSDFEALLFFLKML 276
ERD ++WNSMI GY+Q+G D EAL F +ML
Sbjct: 165 SERDVVTWNSMITGYSQHGFDKEALELFSRML 196
Score = 54.7 bits (130), Expect = 8e-06
Identities = 24/64 (37%), Positives = 41/64 (64%)
Frame = +1
Query: 85 MKLKSISSWNAMISLYTQSGRLDLALAQFEQMEERDAISWNSMIAGYNQNGSDFEALLFF 264
M +K+ SWN +++ Y + G L A + F+++ +RD++SW +MI GYNQ G A+ F
Sbjct: 1 MPVKTTFSWNTILTGYAKLGTLAKAHSVFDEIPDRDSVSWTTMIVGYNQMGRFESAIKMF 60
Query: 265 LKML 276
+ M+
Sbjct: 61 VAMM 64
>ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g22070-like [Vitis vinifera]
Length = 785
Score = 124 bits (312), Expect = 6e-27
Identities = 63/91 (69%), Positives = 71/91 (78%)
Frame = +1
Query: 4 YIPVANSVLNMYGKSGDAETAKVVFGTMKLKSISSWNAMISLYTQSGRLDLALAQFEQME 183
YI VANS+LNMY KSGD TAK+VF MKLKS SSWN MIS + QSG +DLA QFEQM
Sbjct: 179 YISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMI 238
Query: 184 ERDAISWNSMIAGYNQNGSDFEALLFFLKML 276
ERD +SWN+MI+GYNQ+G D EAL F KML
Sbjct: 239 ERDVVSWNAMISGYNQHGFDREALDIFSKML 269
Score = 75.9 bits (185), Expect = 3e-12
Identities = 37/87 (42%), Positives = 55/87 (63%)
Frame = +1
Query: 19 NSVLNMYGKSGDAETAKVVFGTMKLKSISSWNAMISLYTQSGRLDLALAQFEQMEERDAI 198
N+++N Y K+G A VF M +KS+ SWN ++S Y + GRL+ A FE+M E D++
Sbjct: 52 NNLMNFYAKTGFIYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSV 111
Query: 199 SWNSMIAGYNQNGSDFEALLFFLKMLA 279
SW +MI GYNQ G A+ F +M++
Sbjct: 112 SWTAMIVGYNQMGQFENAIGMFREMVS 138
Score = 56.6 bits (135), Expect = 2e-06
Identities = 27/90 (30%), Positives = 52/90 (57%), Gaps = 2/90 (2%)
Frame = +1
Query: 13 VANSVLNMYGKSGDAETAKVVFGTMKLKSIS--SWNAMISLYTQSGRLDLALAQFEQMEE 186
V N++++MY KSG E A+ + + ++ ++ A++ Y + G ++ A F+ +
Sbjct: 315 VGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRV 374
Query: 187 RDAISWNSMIAGYNQNGSDFEALLFFLKML 276
RD ++W +MI GY QNG + +A+ F M+
Sbjct: 375 RDVVAWTAMIVGYVQNGFNQDAMELFRSMI 404
>tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
Length = 987
Score = 123 bits (309), Expect = 1e-26
Identities = 57/91 (62%), Positives = 73/91 (80%)
Frame = +1
Query: 7 IPVANSVLNMYGKSGDAETAKVVFGTMKLKSISSWNAMISLYTQSGRLDLALAQFEQMEE 186
+PVANSVL MYGK GDAETA+ VF M+++S+SSWN M+SLYT GR++LA++ FE M E
Sbjct: 382 VPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVE 441
Query: 187 RDAISWNSMIAGYNQNGSDFEALLFFLKMLA 279
R +SWN++IAGYNQNG D AL FF +ML+
Sbjct: 442 RSIVSWNTIIAGYNQNGLDGMALKFFSRMLS 472
Score = 59.7 bits (143), Expect = 2e-07
Identities = 30/90 (33%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Frame = +1
Query: 13 VANSVLNMYGKSGDAETAKVVFGTMKLKSIS--SWNAMISLYTQSGRLDLALAQFEQMEE 186
+ N++++ Y KSG ETA+ + + ++ S+ A++ Y + G A F+ M
Sbjct: 517 IMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNN 576
Query: 187 RDAISWNSMIAGYNQNGSDFEALLFFLKML 276
RD I+W +MI GY+QNG + EA+ F M+
Sbjct: 577 RDVIAWTAMIVGYHQNGQNDEAMELFRSMI 606
Score = 58.5 bits (140), Expect = 5e-07
Identities = 26/58 (44%), Positives = 41/58 (70%)
Frame = +1
Query: 106 SWNAMISLYTQSGRLDLALAQFEQMEERDAISWNSMIAGYNQNGSDFEALLFFLKMLA 279
+WN+++SLY +SGRL A F +M +RDA+SW MI G N++G ++A+ FL M++
Sbjct: 283 TWNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVS 340
>ref|XP_002310592.1| predicted protein [Populus trichocarpa] gi|222853495|gb|EEE91042.1|
predicted protein [Populus trichocarpa]
Length = 747
Score = 122 bits (306), Expect = 3e-26
Identities = 60/90 (66%), Positives = 72/90 (80%)
Frame = +1
Query: 7 IPVANSVLNMYGKSGDAETAKVVFGTMKLKSISSWNAMISLYTQSGRLDLALAQFEQMEE 186
+PVANS+LNMY K+GD + AKVVF MKL++ SSWNAMISL+ GR+DLALAQFE + E
Sbjct: 142 VPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDLALAQFELLSE 201
Query: 187 RDAISWNSMIAGYNQNGSDFEALLFFLKML 276
RD +SWNSMIAG NQ+G D EAL FF +L
Sbjct: 202 RDIVSWNSMIAGCNQHGFDNEALQFFSSIL 231
Score = 67.4 bits (163), Expect = 1e-09
Identities = 31/86 (36%), Positives = 54/86 (62%)
Frame = +1
Query: 19 NSVLNMYGKSGDAETAKVVFGTMKLKSISSWNAMISLYTQSGRLDLALAQFEQMEERDAI 198
N+++N+Y K+G A +F M +K+ SWN ++S Y + G+L+ A F+ + RD++
Sbjct: 14 NNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRDSV 73
Query: 199 SWNSMIAGYNQNGSDFEALLFFLKML 276
SW ++I GYNQ G +A+ F+ M+
Sbjct: 74 SWTTIIVGYNQMGRFEDAIKIFVDMV 99