BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040336
         (588 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281707.1| PREDICTED: WUSCHEL-related homeobox 3 [Vitis...   127   1e-27
gb|ACU68503.1| WOX3 protein [Petunia x hybrida]                       101   1e-19
ref|XP_003623058.1| WUSCHEL-related homeobox 3B [Medicago trunca...    84   2e-14
ref|XP_003577178.1| PREDICTED: WUSCHEL-related homeobox 3B-like ...    79   4e-13
ref|NP_180429.1| WUSCHEL-related homeobox 3 [Arabidopsis thalian...    79   6e-13

>ref|XP_002281707.1| PREDICTED: WUSCHEL-related homeobox 3 [Vitis vinifera]
           gi|147789069|emb|CAN60351.1| hypothetical protein
           VITISV_005805 [Vitis vinifera]
          Length = 208

 Score =  127 bits (320), Expect = 1e-27
 Identities = 77/162 (47%), Positives = 97/162 (59%), Gaps = 16/162 (9%)
 Frame = -2

Query: 587 KNVFYWFQNHKARDRQKLRRKLYCRQQQQMYLHPTNLYHHH------------LLNHFEA 444
           KNVFYWFQNHKARDRQKLRRKL  + QQQ   H     HHH            LL++ + 
Sbjct: 51  KNVFYWFQNHKARDRQKLRRKLSKQLQQQQQFH----QHHHQPLQQQNQRNQPLLHYLDP 106

Query: 443 AYNPLGQPFYNYSSLQLLPQEGLVPQEASTQVLNYTRKMDIISPMT-EMEK-WMKMYGND 270
                    +NY++   LPQ G+V  +A   V+NYT KMDI    T EMEK  M+MY ++
Sbjct: 107 PVYSAFHQLFNYNTSPFLPQGGVVEDQA--PVINYTWKMDIPGVETSEMEKSMMRMYSHE 164

Query: 269 SATMTDMVPAPA--CCSNTRPLKTLQLFPINSTCSLKNDCST 150
              M DM P P+  CC++ RPLKTLQLFPI +T ++K D +T
Sbjct: 165 WMMMADMPPTPSTPCCNSNRPLKTLQLFPITATPNVKEDSTT 206


>gb|ACU68503.1| WOX3 protein [Petunia x hybrida]
          Length = 222

 Score =  101 bits (251), Expect = 1e-19
 Identities = 68/156 (43%), Positives = 89/156 (57%), Gaps = 14/156 (8%)
 Frame = -2

Query: 587 KNVFYWFQNHKARDRQKLRRKLYCRQQQQMYLHPTNLYHHHLLNHFEAAYNPLGQ-PFYN 411
           KNVFYWFQNHKARDRQKL++KL  +  QQ       L  HH ++      N L Q P Y+
Sbjct: 57  KNVFYWFQNHKARDRQKLKKKLLAQMNQQQI-----LAQHHPVDAHSTTNNSLFQLPEYS 111

Query: 410 YSSL----QLLP--------QEGLVPQEASTQVLNYTRKMDIISPMTEMEKWM-KMYGND 270
           ++S     Q+ P        QEG + +EAS +V+ Y   MD+  P +EME  M + YG D
Sbjct: 112 HNSSSVVNQICPFTSTTGFLQEGGI-KEASPRVMTYLYPMDLSRP-SEMENCMVRPYGKD 169

Query: 269 SATMTDMVPAPACCSNTRPLKTLQLFPINSTCSLKN 162
              M ++ P   C  N RPLKTL LFPI +T +LK+
Sbjct: 170 WILMMNITPPLPCNVNDRPLKTLPLFPITTTSTLKD 205


>ref|XP_003623058.1| WUSCHEL-related homeobox 3B [Medicago truncatula]
           gi|355498073|gb|AES79276.1| WUSCHEL-related homeobox 3B
           [Medicago truncatula]
          Length = 206

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 62/157 (39%), Positives = 85/157 (54%), Gaps = 20/157 (12%)
 Frame = -2

Query: 587 KNVFYWFQNHKARDRQKLRRKL----------YCRQQQQMYLHPTNLYHHHLL-NHFEAA 441
           KNVFYWFQNHKARDRQKLRRKL            +QQQQ+++H   L H++++ NHF   
Sbjct: 51  KNVFYWFQNHKARDRQKLRRKLNKQLQLQQQQQQQQQQQLHVHHCQLNHNNMISNHFVG- 109

Query: 440 YNPLGQPF------YNYSSLQLLPQEGLVPQEASTQVLNYTRKMDIISPMTEMEKWMKMY 279
            +  G PF      +++ +   L  EG V    S   +N  +     +  + MEK    +
Sbjct: 110 -STFGYPFGSNAQDFSFFNSPSLLFEGSVSANTSEGEIN-CKWNGYNNQQSLMEKKDIAF 167

Query: 278 GNDS-ATMTDMV--PAPACCSNTRPLKTLQLFPINST 177
            N    T+ D V   AP+CC  T+PLKTL LFP+ +T
Sbjct: 168 SNYGWTTLMDNVNHEAPSCC--TKPLKTLDLFPLTTT 202


>ref|XP_003577178.1| PREDICTED: WUSCHEL-related homeobox 3B-like [Brachypodium
           distachyon]
          Length = 192

 Score = 79.3 bits (194), Expect = 4e-13
 Identities = 55/155 (35%), Positives = 78/155 (50%), Gaps = 7/155 (4%)
 Frame = -2

Query: 587 KNVFYWFQNHKARDRQKLRRKLYCRQQQQ-----MYLHPTNLYHHHLLNHFEAAYNPLGQ 423
           KNVFYWFQNHKAR+RQ+LRR+L  R QQQ       +HP  +  HH  +H          
Sbjct: 51  KNVFYWFQNHKARERQRLRRRLCARHQQQPPGAVNVMHPAVMQLHHHHHH---------H 101

Query: 422 PFYNYSSLQLLPQEGLVPQEASTQVLNYTRKMDIISPMTEMEKWMKMYGNDSATMTDMVP 243
           P+   ++   +P +G   Q+         +      P++ +E      G  S+    M P
Sbjct: 102 PYATTTTCSFMPPQGYSHQQ--------QQDAGGAVPVSGLE--FPAAGGGSSGAGGMTP 151

Query: 242 AP-ACCSNTRPLKTLQLFPINST-CSLKNDCSTPK 144
            P  CC   RPL+TL+LFP  ST   L+++CS+ K
Sbjct: 152 PPWPCC---RPLRTLELFPTKSTGGGLRDECSSSK 183


>ref|NP_180429.1| WUSCHEL-related homeobox 3 [Arabidopsis thaliana]
           gi|61217434|sp|Q9SIB4.1|WOX3_ARATH RecName:
           Full=WUSCHEL-related homeobox 3; AltName: Full=Protein
           PRESSED FLOWER gi|4580396|gb|AAD24374.1| putative
           homeodomain transcription factor [Arabidopsis thaliana]
           gi|17907768|dbj|BAB79446.1| PRESSED FLOWER [Arabidopsis
           thaliana] gi|37954308|gb|AAP37135.1| PRS/WOX3 protein
           [Arabidopsis thaliana] gi|91806283|gb|ABE65869.1|
           homeobox-leucine zipper transcription factor
           [Arabidopsis thaliana] gi|330253055|gb|AEC08149.1|
           WUSCHEL-related homeobox 3 [Arabidopsis thaliana]
          Length = 244

 Score = 79.0 bits (193), Expect = 6e-13
 Identities = 63/184 (34%), Positives = 80/184 (43%), Gaps = 48/184 (26%)
 Frame = -2

Query: 587 KNVFYWFQNHKARDRQKLRRKLYCRQQQQMY--------------------------LHP 486
           KNVFYWFQNHKARDRQKLR+KL  +  QQ +                          +  
Sbjct: 51  KNVFYWFQNHKARDRQKLRKKLAKQLHQQQHQLQLQLQQIKPKPISSMISQPVNKNIIDH 110

Query: 485 TNLYHHHLLNHFEAAYNPLGQPFY---NYSSLQLLPQEGLVPQEASTQVLN--YTRK--M 327
            N YHHH  NH    + P     +   ++ S   LP +G    EA ++V+N  Y  K   
Sbjct: 111 HNPYHHHHHNHHHNHHRPYDHMSFDCCSHPSPMCLPHQGTGVGEAPSKVMNEYYCTKSGA 170

Query: 326 DIISPMTEMEKWMKMYGNDSATMTDMVPAP----------ACC-----SNTRPLKTLQLF 192
           + I     +      YG D   M DM P P          +CC     S   PLKTL+LF
Sbjct: 171 EEILMQKSITGPNSSYGRDWMMMMDMGPRPSYPSSSSSPISCCNMMMSSPKIPLKTLELF 230

Query: 191 PINS 180
           PI+S
Sbjct: 231 PISS 234