BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040316
         (455 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Ja...   142   4e-32
gb|ABB46931.2| retrotransposon protein, putative, unclassified [...   142   4e-32
gb|AAD24831.1| putative non-LTR retroelement reverse transcripta...   139   2e-31
gb|AAD20714.1| putative non-LTR retroelement reverse transcripta...   139   2e-31
gb|EEC83100.1| hypothetical protein OsI_28249 [Oryza sativa Indi...   138   5e-31

>gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1888

 Score =  142 bits (357), Expect = 4e-32
 Identities = 73/147 (49%), Positives = 95/147 (64%)
 Frame = +1

Query: 1    ITNRENELLGVCPSDEEIWRIIKKLHPLKAPGPDGFQGIFYQRCWDIVGITIIKTVQDFF 180
            +T+  NE L    S+EEI   + ++ PLKAPGPDGF G FYQR W I+   I++ VQ+FF
Sbjct: 987  VTDAMNEELCKTFSEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDDIVRAVQEFF 1046

Query: 181  LYNTLPPDLNETFITLIPKIPTPDHISKFRPISLCNFTYKIISKILANRLKTHLHKIISP 360
               T+P  +NET I LIPK   P  +  FRPISLCN  YKI+SK L NRL+  L  ++S 
Sbjct: 1047 SLGTMPSGVNETAIVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVNRLRPILDDLVSQ 1106

Query: 361  FQGAFVKGRFIGDNIGLASELFHNMKK 441
             Q AFV GR I DN  +A E FH++++
Sbjct: 1107 NQSAFVPGRLITDNALIAFEYFHHIQR 1133


>gb|ABB46931.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1853

 Score =  142 bits (357), Expect = 4e-32
 Identities = 73/147 (49%), Positives = 95/147 (64%)
 Frame = +1

Query: 1    ITNRENELLGVCPSDEEIWRIIKKLHPLKAPGPDGFQGIFYQRCWDIVGITIIKTVQDFF 180
            +T+  NE L    S+EEI   + ++ PLKAPGPDGF G FYQR W I+   I++ VQ+FF
Sbjct: 952  VTDAMNEELCKTFSEEEIANALFQIGPLKAPGPDGFPGRFYQRNWAILKDDIVRAVQEFF 1011

Query: 181  LYNTLPPDLNETFITLIPKIPTPDHISKFRPISLCNFTYKIISKILANRLKTHLHKIISP 360
               T+P  +NET I LIPK   P  +  FRPISLCN  YKI+SK L NRL+  L  ++S 
Sbjct: 1012 SLGTMPSGVNETAIVLIPKTEQPQELKDFRPISLCNVVYKIVSKCLVNRLRPILDDLVSQ 1071

Query: 361  FQGAFVKGRFIGDNIGLASELFHNMKK 441
             Q AFV GR I DN  +A E FH++++
Sbjct: 1072 NQSAFVPGRLITDNALIAFEYFHHIQR 1098


>gb|AAD24831.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1524

 Score =  139 bits (351), Expect = 2e-31
 Identities = 70/146 (47%), Positives = 94/146 (64%)
 Frame = +1

Query: 1    ITNRENELLGVCPSDEEIWRIIKKLHPLKAPGPDGFQGIFYQRCWDIVGITIIKTVQDFF 180
            +TN  N  L    SD EI+  I ++   KAPGPDG    FY+ CWDIVG  +I  V+ FF
Sbjct: 572  VTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFF 631

Query: 181  LYNTLPPDLNETFITLIPKIPTPDHISKFRPISLCNFTYKIISKILANRLKTHLHKIISP 360
              + + P +N T I +IPKI  P  +S +RPI+LCN  YK+ISK L NRLK+HL+ I+S 
Sbjct: 632  ETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSD 691

Query: 361  FQGAFVKGRFIGDNIGLASELFHNMK 438
             Q AF+ GR I DN+ +A E+ H++K
Sbjct: 692  SQAAFIPGRIINDNVMIAHEVMHSLK 717


>gb|AAD20714.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1750

 Score =  139 bits (351), Expect = 2e-31
 Identities = 70/146 (47%), Positives = 94/146 (64%)
 Frame = +1

Query: 1    ITNRENELLGVCPSDEEIWRIIKKLHPLKAPGPDGFQGIFYQRCWDIVGITIIKTVQDFF 180
            +TN  N  L    SD EI+  I ++   KAPGPDG    FY+ CWDIVG  +I  V+ FF
Sbjct: 798  VTNTVNLDLTKEFSDTEIYDAICQIGDDKAPGPDGLTARFYKNCWDIVGYDVILEVKKFF 857

Query: 181  LYNTLPPDLNETFITLIPKIPTPDHISKFRPISLCNFTYKIISKILANRLKTHLHKIISP 360
              + + P +N T I +IPKI  P  +S +RPI+LCN  YK+ISK L NRLK+HL+ I+S 
Sbjct: 858  ETSFMKPSINHTNICMIPKITNPTTLSDYRPIALCNVLYKVISKCLVNRLKSHLNSIVSD 917

Query: 361  FQGAFVKGRFIGDNIGLASELFHNMK 438
             Q AF+ GR I DN+ +A E+ H++K
Sbjct: 918  SQAAFIPGRIINDNVMIAHEVMHSLK 943


>gb|EEC83100.1| hypothetical protein OsI_28249 [Oryza sativa Indica Group]
          Length = 1300

 Score =  138 bits (347), Expect = 5e-31
 Identities = 70/147 (47%), Positives = 95/147 (64%)
 Frame = +1

Query: 1   ITNRENELLGVCPSDEEIWRIIKKLHPLKAPGPDGFQGIFYQRCWDIVGITIIKTVQDFF 180
           I++  N+ L    SDEEI   + ++ PLKA GPDGF   FYQR W  + + I++ V++FF
Sbjct: 338 ISHEMNDSLCRDFSDEEISNALFQIGPLKALGPDGFPARFYQRNWPTLKVDILRAVKEFF 397

Query: 181 LYNTLPPDLNETFITLIPKIPTPDHISKFRPISLCNFTYKIISKILANRLKTHLHKIISP 360
               +P D+NET I LIPK+  P  +  FRPISLCN  YK++SK L NR++  L +++SP
Sbjct: 398 HTGVMPDDVNETTIVLIPKVAQPSQLKDFRPISLCNVLYKVVSKCLVNRMRPILDEVVSP 457

Query: 361 FQGAFVKGRFIGDNIGLASELFHNMKK 441
            Q AFV GR I DN  LA E FH ++K
Sbjct: 458 NQSAFVPGRLITDNALLAFECFHFIQK 484