BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040311
         (320 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containi...   177   1e-42
emb|CBI27235.3| unnamed protein product [Vitis vinifera]              177   1e-42
ref|XP_002299387.1| predicted protein [Populus trichocarpa] gi|2...   171   4e-41
ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arab...   162   3e-38
ref|NP_191302.2| pentatricopeptide repeat-containing protein [Ar...   156   1e-36

>ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  177 bits (448), Expect = 1e-42
 Identities = 80/106 (75%), Positives = 98/106 (92%)
 Frame = +2

Query: 2   EPTPDHYACVVDLLGRAGKLDDAYALITSMPSGSDQVGAWSSLLGACRLHQNVKLGEIAT 181
           EPT DHYACVVDLLGRAG+L++AY L+ +MP+  D+VGAWSSLLGACR+HQNV+LGE+A 
Sbjct: 657 EPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAA 716

Query: 182 QNLISMEPHVASHYVLLSNIYSAAGLWNKALDVRKNMKAMGVKKEP 319
           +NL+ +EP+VASHYVLLSNIYS+AGLWNKA++VRKNM+ MGVKKEP
Sbjct: 717 KNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEP 762


>emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  177 bits (448), Expect = 1e-42
 Identities = 80/106 (75%), Positives = 98/106 (92%)
 Frame = +2

Query: 2   EPTPDHYACVVDLLGRAGKLDDAYALITSMPSGSDQVGAWSSLLGACRLHQNVKLGEIAT 181
           EPT DHYACVVDLLGRAG+L++AY L+ +MP+  D+VGAWSSLLGACR+HQNV+LGE+A 
Sbjct: 457 EPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAA 516

Query: 182 QNLISMEPHVASHYVLLSNIYSAAGLWNKALDVRKNMKAMGVKKEP 319
           +NL+ +EP+VASHYVLLSNIYS+AGLWNKA++VRKNM+ MGVKKEP
Sbjct: 517 KNLLHLEPNVASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEP 562


>ref|XP_002299387.1| predicted protein [Populus trichocarpa] gi|222846645|gb|EEE84192.1|
           predicted protein [Populus trichocarpa]
          Length = 814

 Score =  171 bits (434), Expect = 4e-41
 Identities = 74/106 (69%), Positives = 97/106 (91%)
 Frame = +2

Query: 2   EPTPDHYACVVDLLGRAGKLDDAYALITSMPSGSDQVGAWSSLLGACRLHQNVKLGEIAT 181
           EP PDHYAC+VDL+GRAGK+++AY L+ +MPSG D+VGAWSSLLGACR++ N+++GEIA 
Sbjct: 575 EPAPDHYACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAA 634

Query: 182 QNLISMEPHVASHYVLLSNIYSAAGLWNKALDVRKNMKAMGVKKEP 319
           +NL+ ++P VASHYVLLSNIYS+AGLW+KA+++R+ MKAMGVKKEP
Sbjct: 635 ENLLQLQPDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEP 680


>ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata] gi|297323990|gb|EFH54411.1| hypothetical protein
           ARALYDRAFT_486188 [Arabidopsis lyrata subsp. lyrata]
          Length = 886

 Score =  162 bits (410), Expect = 3e-38
 Identities = 74/106 (69%), Positives = 91/106 (85%)
 Frame = +2

Query: 2   EPTPDHYACVVDLLGRAGKLDDAYALITSMPSGSDQVGAWSSLLGACRLHQNVKLGEIAT 181
           EP+ DHYACVVDLLGRAG++ +AY LI  +P   D+ GAWSSLLGACR+H N+++GEIA 
Sbjct: 647 EPSSDHYACVVDLLGRAGRVKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAA 706

Query: 182 QNLISMEPHVASHYVLLSNIYSAAGLWNKALDVRKNMKAMGVKKEP 319
           QNLI +EP+VASHYVLL+NIYS+AGLW KA +VR+NMKA GV+KEP
Sbjct: 707 QNLIQLEPNVASHYVLLANIYSSAGLWYKATEVRRNMKAQGVRKEP 752


>ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
           gi|332646133|gb|AEE79654.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  156 bits (395), Expect = 1e-36
 Identities = 71/106 (66%), Positives = 90/106 (84%)
 Frame = +2

Query: 2   EPTPDHYACVVDLLGRAGKLDDAYALITSMPSGSDQVGAWSSLLGACRLHQNVKLGEIAT 181
           EP+ DHYACVVDLLGRAG++ +AY L+  MP   ++ GAWSSLLGA R+H N+++GEIA 
Sbjct: 651 EPSSDHYACVVDLLGRAGRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAA 710

Query: 182 QNLISMEPHVASHYVLLSNIYSAAGLWNKALDVRKNMKAMGVKKEP 319
           QNLI +EP+VASHYVLL+NIYS+AGLW+KA +VR+NMK  GV+KEP
Sbjct: 711 QNLIQLEPNVASHYVLLANIYSSAGLWDKATEVRRNMKEQGVRKEP 756