BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040260
         (307 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]            188   4e-46
gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum] gi|26984...   187   8e-46
ref|XP_002298421.1| predicted protein [Populus trichocarpa] gi|2...   185   3e-45
emb|CBI24922.3| unnamed protein product [Vitis vinifera]              184   8e-45
ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis v...   184   8e-45

>dbj|BAE06274.1| topoisomerase II [Scutellaria baicalensis]
          Length = 1469

 Score =  188 bits (477), Expect = 4e-46
 Identities = 90/101 (89%), Positives = 94/101 (93%)
 Frame = -1

Query: 304 YQKKTQLEHILLRPDTYIGSVEKHPQTLWVYENETMVQKPISYVPGLYKIFDEILVNAAD 125
           YQKKTQLEHILLRPDTYIGS+E+H QTLWVYENE MVQK I+YVPGLYKIFDEILVNAAD
Sbjct: 35  YQKKTQLEHILLRPDTYIGSIERHTQTLWVYENEQMVQKSITYVPGLYKIFDEILVNAAD 94

Query: 124 NKQRDPKMDSVKVVIDAEENVISVYNNGDGVPVEIHQEEGV 2
           NKQRDPKM+SVKV ID E N ISVYNNGDGVPVEIHQEEGV
Sbjct: 95  NKQRDPKMNSVKVTIDVESNCISVYNNGDGVPVEIHQEEGV 135


>gb|AAN85207.1| DNA topoisomerase II [Nicotiana tabacum] gi|26984168|gb|AAN85208.1|
           DNA topoisomerase II [Nicotiana tabacum]
          Length = 1482

 Score =  187 bits (475), Expect = 8e-46
 Identities = 87/102 (85%), Positives = 96/102 (94%)
 Frame = -1

Query: 307 TYQKKTQLEHILLRPDTYIGSVEKHPQTLWVYENETMVQKPISYVPGLYKIFDEILVNAA 128
           TYQKKTQLEHILLRPDTYIGSVEKH QTLWV+EN+ M  +P++YVPGLYKIFDEILVNAA
Sbjct: 26  TYQKKTQLEHILLRPDTYIGSVEKHTQTLWVWENDKMTHRPVTYVPGLYKIFDEILVNAA 85

Query: 127 DNKQRDPKMDSVKVVIDAEENVISVYNNGDGVPVEIHQEEGV 2
           DNKQRDPKMD+V+VVID E+N ISVYNNGDG+PVEIHQEEGV
Sbjct: 86  DNKQRDPKMDAVEVVIDPEQNFISVYNNGDGIPVEIHQEEGV 127


>ref|XP_002298421.1| predicted protein [Populus trichocarpa] gi|222845679|gb|EEE83226.1|
           predicted protein [Populus trichocarpa]
          Length = 1468

 Score =  185 bits (470), Expect = 3e-45
 Identities = 85/102 (83%), Positives = 96/102 (94%)
 Frame = -1

Query: 307 TYQKKTQLEHILLRPDTYIGSVEKHPQTLWVYENETMVQKPISYVPGLYKIFDEILVNAA 128
           TYQKK+QLEHILLRPDTYIGS+EKH QTLWVYE + +V +P++YVPGLYKIFDEILVNAA
Sbjct: 10  TYQKKSQLEHILLRPDTYIGSIEKHAQTLWVYEGDKIVHRPVTYVPGLYKIFDEILVNAA 69

Query: 127 DNKQRDPKMDSVKVVIDAEENVISVYNNGDGVPVEIHQEEGV 2
           DNKQRDPKMDS+KVVID E N++SVYNNGDGVPVEIH+EEGV
Sbjct: 70  DNKQRDPKMDSLKVVIDGENNLVSVYNNGDGVPVEIHKEEGV 111


>emb|CBI24922.3| unnamed protein product [Vitis vinifera]
          Length = 1452

 Score =  184 bits (466), Expect = 8e-45
 Identities = 87/102 (85%), Positives = 93/102 (91%)
 Frame = -1

Query: 307 TYQKKTQLEHILLRPDTYIGSVEKHPQTLWVYENETMVQKPISYVPGLYKIFDEILVNAA 128
           TYQKK+QLEHILLRPDTYIGS+EKH Q LWV+EN  MV + +SYVPGLYKIFDEILVNAA
Sbjct: 29  TYQKKSQLEHILLRPDTYIGSIEKHTQALWVFENNEMVHRSVSYVPGLYKIFDEILVNAA 88

Query: 127 DNKQRDPKMDSVKVVIDAEENVISVYNNGDGVPVEIHQEEGV 2
           DNKQRDP MDSVKVVID E+N ISVYNNGDGVPVEIHQEEGV
Sbjct: 89  DNKQRDPSMDSVKVVIDVEKNCISVYNNGDGVPVEIHQEEGV 130


>ref|XP_002274267.1| PREDICTED: DNA topoisomerase 2-like [Vitis vinifera]
          Length = 1489

 Score =  184 bits (466), Expect = 8e-45
 Identities = 87/102 (85%), Positives = 93/102 (91%)
 Frame = -1

Query: 307 TYQKKTQLEHILLRPDTYIGSVEKHPQTLWVYENETMVQKPISYVPGLYKIFDEILVNAA 128
           TYQKK+QLEHILLRPDTYIGS+EKH Q LWV+EN  MV + +SYVPGLYKIFDEILVNAA
Sbjct: 29  TYQKKSQLEHILLRPDTYIGSIEKHTQALWVFENNEMVHRSVSYVPGLYKIFDEILVNAA 88

Query: 127 DNKQRDPKMDSVKVVIDAEENVISVYNNGDGVPVEIHQEEGV 2
           DNKQRDP MDSVKVVID E+N ISVYNNGDGVPVEIHQEEGV
Sbjct: 89  DNKQRDPSMDSVKVVIDVEKNCISVYNNGDGVPVEIHQEEGV 130