BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040229
         (411 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...    99   3e-19
gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Ja...    99   5e-19
gb|ABB46931.2| retrotransposon protein, putative, unclassified [...    99   5e-19
gb|EEC81314.1| hypothetical protein OsI_24468 [Oryza sativa Indi...    98   8e-19
ref|XP_003579203.1| PREDICTED: uncharacterized protein LOC100839...    97   1e-18

>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
           gi|7267666|emb|CAB78094.1| RNA-directed DNA
           polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 54/132 (40%), Positives = 71/132 (53%)
 Frame = +2

Query: 14  FLKWYWSTISPTMIAAIQDFFVVGRLPLTLNETFITLIPKITNPEHISNFRPISLSNFXX 193
           F   YW  I   +   I+ FFV   L   LNET +TLIPKI+ P  +S++RPI+L N   
Sbjct: 396 FFHAYWDIIEADVSRDIRSFFVDSCLSPRLNETHVTLIPKISAPRKVSDYRPIALCNVQY 455

Query: 194 XXXXXXXXXXXXPLLHKLISLHQAAFVKSRSIGDNTSMASEIFHSXXXXXXXRQG*MAIK 373
                       P L +LISLHQ+AFV  R+I DN  +  EI H        +   MAIK
Sbjct: 456 KIVAKILTRRLQPWLSELISLHQSAFVPGRAIADNVLITHEILHFLRVSGAKKYCSMAIK 515

Query: 374 LDMAKTFDRVEW 409
            DM+K +DR++W
Sbjct: 516 TDMSKAYDRIKW 527


>gb|AAM01179.2|AC113336_31 Putative retroelement [Oryza sativa Japonica Group]
          Length = 1888

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 51/136 (37%), Positives = 73/136 (53%)
 Frame = +2

Query: 2    F*GIFLKWYWSTISPTMIAAIQDFFVVGRLPLTLNETFITLIPKITNPEHISNFRPISLS 181
            F G F +  W+ +   ++ A+Q+FF +G +P  +NET I LIPK   P+ + +FRPISL 
Sbjct: 1022 FPGRFYQRNWAILKDDIVRAVQEFFSLGTMPSGVNETAIVLIPKTEQPQELKDFRPISLC 1081

Query: 182  NFXXXXXXXXXXXXXXPLLHKLISLHQAAFVKSRSIGDNTSMASEIFHSXXXXXXXRQG* 361
            N               P+L  L+S +Q+AFV  R I DN  +A E FH            
Sbjct: 1082 NVVYKIVSKCLVNRLRPILDDLVSQNQSAFVPGRLITDNALIAFEYFHHIQRNKNPENAY 1141

Query: 362  MAIKLDMAKTFDRVEW 409
             A KLD++K +DRV+W
Sbjct: 1142 SAYKLDLSKAYDRVDW 1157


>gb|ABB46931.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1853

 Score = 98.6 bits (244), Expect = 5e-19
 Identities = 51/136 (37%), Positives = 73/136 (53%)
 Frame = +2

Query: 2    F*GIFLKWYWSTISPTMIAAIQDFFVVGRLPLTLNETFITLIPKITNPEHISNFRPISLS 181
            F G F +  W+ +   ++ A+Q+FF +G +P  +NET I LIPK   P+ + +FRPISL 
Sbjct: 987  FPGRFYQRNWAILKDDIVRAVQEFFSLGTMPSGVNETAIVLIPKTEQPQELKDFRPISLC 1046

Query: 182  NFXXXXXXXXXXXXXXPLLHKLISLHQAAFVKSRSIGDNTSMASEIFHSXXXXXXXRQG* 361
            N               P+L  L+S +Q+AFV  R I DN  +A E FH            
Sbjct: 1047 NVVYKIVSKCLVNRLRPILDDLVSQNQSAFVPGRLITDNALIAFEYFHHIQRNKNPENAY 1106

Query: 362  MAIKLDMAKTFDRVEW 409
             A KLD++K +DRV+W
Sbjct: 1107 SAYKLDLSKAYDRVDW 1122


>gb|EEC81314.1| hypothetical protein OsI_24468 [Oryza sativa Indica Group]
          Length = 797

 Score = 97.8 bits (242), Expect = 8e-19
 Identities = 52/132 (39%), Positives = 74/132 (56%)
 Frame = +2

Query: 14   FLKWYWSTISPTMIAAIQDFFVVGRLPLTLNETFITLIPKITNPEHISNFRPISLSNFXX 193
            F +  W+TI   ++AA+++FF  G +P   NET I LIPKI  P  + +FRPISL N   
Sbjct: 652  FYQRNWATIKSDVVAAVKEFFHSGIMPEGANETAIVLIPKIDQPVELKDFRPISLCNVLY 711

Query: 194  XXXXXXXXXXXXPLLHKLISLHQAAFVKSRSIGDNTSMASEIFHSXXXXXXXRQG*MAIK 373
                        P+L +LI ++Q+AFV  R I DN+ +A E FH         +   A K
Sbjct: 712  KIVSKCLVNRLRPILDELILVNQSAFVPGRLITDNSLLAFECFHFIQKNKHQNKAACAYK 771

Query: 374  LDMAKTFDRVEW 409
            LD++K +DRV+W
Sbjct: 772  LDLSKAYDRVDW 783


>ref|XP_003579203.1| PREDICTED: uncharacterized protein LOC100839353 [Brachypodium
           distachyon]
          Length = 1236

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 53/132 (40%), Positives = 75/132 (56%)
 Frame = +2

Query: 14  FLKWYWSTISPTMIAAIQDFFVVGRLPLTLNETFITLIPKITNPEHISNFRPISLSNFXX 193
           F + +W+T+   +I A+++FFV G +P  +N+T I LIPKI NP ++ +F PISL N   
Sbjct: 68  FFQRHWATVKKDIIRAVRNFFVTGAMPYGVNDTIIVLIPKIKNPMYLKDFCPISLCNVIY 127

Query: 194 XXXXXXXXXXXXPLLHKLISLHQAAFVKSRSIGDNTSMASEIFHSXXXXXXXRQG*MAIK 373
                       PLL+ LIS  Q+AFV  R I DN  +A E  H+        +   A K
Sbjct: 128 KVVAKCLANRLRPLLNVLISDAQSAFVPGRMITDNAIIAFECIHALQHGENTGKF-CAYK 186

Query: 374 LDMAKTFDRVEW 409
           LD+AK +DRV+W
Sbjct: 187 LDLAKAYDRVDW 198