BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040155
         (289 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002522236.1| pentatricopeptide repeat-containing protein,...   118   4e-25
ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containi...   117   8e-25
ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containi...   114   6e-24
ref|XP_003629790.1| Pentatricopeptide repeat-containing protein ...   114   6e-24
ref|XP_003608008.1| Pentatricopeptide repeat-containing protein ...   114   6e-24

>ref|XP_002522236.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538489|gb|EEF40094.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 640

 Score =  118 bits (296), Expect = 4e-25
 Identities = 55/96 (57%), Positives = 73/96 (76%)
 Frame = -1

Query: 289 GDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVG 110
           G ++ESV LFR+M  LG++ N +T SC+LKCF  LGS  EGE  HGY+L+LG+G  N V 
Sbjct: 179 GAFEESVYLFRKMLDLGIQVNSHTVSCILKCFAALGSVKEGEWVHGYLLKLGFGSYNTVV 238

Query: 109 NALIAFYSKCKKMEKARRVFDELSDRDVISWNSIIS 2
           N+LI+FY K +K+E A  VFDEL +RD++SWNS+IS
Sbjct: 239 NSLISFYFKTRKIEAAYEVFDELKNRDIVSWNSMIS 274



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 33/91 (36%), Positives = 50/91 (54%)
 Frame = -1

Query: 277 ESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVGNALI 98
           E + LF EM + GV  + +T + VL      GS   G++ H YV          V N+L+
Sbjct: 385 EGIRLFHEMEREGVRPDNFTVTAVLHACACSGSLEIGKDVHDYVKENNMQKDRIVCNSLM 444

Query: 97  AFYSKCKKMEKARRVFDELSDRDVISWNSII 5
             Y+KC  ME A  VF E+ ++D++SWN++I
Sbjct: 445 DMYAKCGSMEDANLVFLEMPNKDIVSWNTMI 475



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 35/97 (36%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
 Frame = -1

Query: 289 GDYKESVLLFREM-RKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRV 113
           G   E++ LF  M ++L  +G   T +C+L     L +   G E HGY+ R G      V
Sbjct: 482 GRPNETLHLFVAMVQELKPDGR--TMACILPACASLAALDRGREIHGYIQRNGCFDDLHV 539

Query: 112 GNALIAFYSKCKKMEKARRVFDELSDRDVISWNSIIS 2
            NALI  Y+KC  +  AR  FD +  +D+ISW  +I+
Sbjct: 540 ANALIDMYAKCGALALARLFFDMIPVKDLISWTVMIA 576



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 29/93 (31%), Positives = 47/93 (50%)
 Frame = -1

Query: 280 KESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVGNAL 101
           ++ + +F+EM  LGV  +  T   VL      G+F  G   H + ++          N L
Sbjct: 283 EKGIQVFKEMLYLGVSFDLVTLVNVLAACANSGNFPLGRVLHAFAIKAQLDQRMTFVNTL 342

Query: 100 IAFYSKCKKMEKARRVFDELSDRDVISWNSIIS 2
           +  YSKC  +  A RVF ++ +R V+SW S+I+
Sbjct: 343 LDMYSKCGDLNNAIRVFQKMGERSVVSWTSLIA 375


>ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 1227

 Score =  117 bits (294), Expect = 8e-25
 Identities = 54/96 (56%), Positives = 72/96 (75%)
 Frame = -1

Query: 289 GDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVG 110
           GDY+ES+ LF++M+KLG+ GN YTFSC+LKCF  LG   E +  HG V +LG+G  N V 
Sbjct: 532 GDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVV 591

Query: 109 NALIAFYSKCKKMEKARRVFDELSDRDVISWNSIIS 2
           N+LIA Y K  +++ A ++FDEL DRDV+SWNS+IS
Sbjct: 592 NSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMIS 627



 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 32/95 (33%), Positives = 52/95 (54%)
 Frame = -1

Query: 289  GDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVG 110
            G Y +++ LF EM   GV  + Y+ + VL       S  +G + H Y+ +        V 
Sbjct: 734  GLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVS 793

Query: 109  NALIAFYSKCKKMEKARRVFDELSDRDVISWNSII 5
            NAL+  Y+KC  ME+A  VF ++  +D++SWN++I
Sbjct: 794  NALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMI 828



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 35/92 (38%), Positives = 51/92 (55%)
 Frame = -1

Query: 277  ESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVGNALI 98
            E++ LF EM+K     +  T +C+L   G L +   G   HG +LR GY     V NALI
Sbjct: 839  EALKLFAEMQKES-RPDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSELHVANALI 897

Query: 97   AFYSKCKKMEKARRVFDELSDRDVISWNSIIS 2
              Y KC  +  AR +FD + ++D+I+W  +IS
Sbjct: 898  DMYVKCGSLVHARLLFDMIPEKDLITWTVMIS 929


>ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  114 bits (286), Expect = 6e-24
 Identities = 55/96 (57%), Positives = 72/96 (75%)
 Frame = -1

Query: 289 GDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVG 110
           G+Y+ESV LF +M++LG+ G+ YTF+CVLK F       E +  HGYVL+LG+G  N V 
Sbjct: 137 GNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVV 196

Query: 109 NALIAFYSKCKKMEKARRVFDELSDRDVISWNSIIS 2
           N+LIA Y KC ++E AR +FDELSDRDV+SWNS+IS
Sbjct: 197 NSLIAAYFKCGEVESARILFDELSDRDVVSWNSMIS 232



 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 30/95 (31%), Positives = 54/95 (56%)
 Frame = -1

Query: 289 GDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVG 110
           G + E++ LF EM+  G+  + Y  + V+       S  +G E H ++ +   G +  V 
Sbjct: 339 GLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMGSNLPVS 398

Query: 109 NALIAFYSKCKKMEKARRVFDELSDRDVISWNSII 5
           NAL+  Y+KC  ME+A  +F +L  ++++SWN++I
Sbjct: 399 NALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMI 433



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 32/92 (34%), Positives = 54/92 (58%)
 Frame = -1

Query: 277 ESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVGNALI 98
           E++ LF +M+K  ++ +  T +CVL    GL +  +G E HG++LR GY     V  AL+
Sbjct: 444 EALQLFLDMQKQ-LKPDDVTMACVLPACAGLAALEKGREIHGHILRKGYFSDLHVACALV 502

Query: 97  AFYSKCKKMEKARRVFDELSDRDVISWNSIIS 2
             Y KC  +  A+++FD +  +D+I W  +I+
Sbjct: 503 DMYVKCGLLVLAQQLFDMIPKKDMILWTVMIA 534


>ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355523812|gb|AET04266.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  114 bits (286), Expect = 6e-24
 Identities = 54/96 (56%), Positives = 72/96 (75%)
 Frame = -1

Query: 289 GDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVG 110
           G+++ESV LF++M+KLGV GN YTF+CVLKCF  LG   E +  HGYVL+LG+G +  V 
Sbjct: 174 GNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVV 233

Query: 109 NALIAFYSKCKKMEKARRVFDELSDRDVISWNSIIS 2
           N+LIA Y K   +E A  +FDELS+ DV+SWNS+I+
Sbjct: 234 NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMIN 269



 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 35/95 (36%), Positives = 58/95 (61%)
 Frame = -1

Query: 289 GDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVG 110
           G Y +++ LF EM+  GV  + YT + ++       S  +G + H YV++ G G +  V 
Sbjct: 376 GLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVT 435

Query: 109 NALIAFYSKCKKMEKARRVFDELSDRDVISWNSII 5
           NALI  Y+KC  +E+AR VF ++  +D++SWN++I
Sbjct: 436 NALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMI 470



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 33/92 (35%), Positives = 54/92 (58%)
 Frame = -1

Query: 277 ESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVGNALI 98
           E++ LF +M+K   + +  T +CVL    GL +  +G E HG++LR GY     V  AL+
Sbjct: 481 EALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALV 539

Query: 97  AFYSKCKKMEKARRVFDELSDRDVISWNSIIS 2
             Y+KC  +  A+ +FD +  +D+ISW  +I+
Sbjct: 540 DMYAKCGLLVLAQLLFDMIPKKDLISWTVMIA 571


>ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355509063|gb|AES90205.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  114 bits (286), Expect = 6e-24
 Identities = 54/96 (56%), Positives = 72/96 (75%)
 Frame = -1

Query: 289 GDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVG 110
           G+++ESV LF++M+KLGV GN YTF+CVLKCF  LG   E +  HGYVL+LG+G +  V 
Sbjct: 449 GNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVV 508

Query: 109 NALIAFYSKCKKMEKARRVFDELSDRDVISWNSIIS 2
           N+LIA Y K   +E A  +FDELS+ DV+SWNS+I+
Sbjct: 509 NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMIN 544



 Score = 74.3 bits (181), Expect = 1e-11
 Identities = 35/95 (36%), Positives = 58/95 (61%)
 Frame = -1

Query: 289 GDYKESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVG 110
           G Y +++ LF EM+  GV  + YT + ++       S  +G + H YV++ G G +  V 
Sbjct: 651 GLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVT 710

Query: 109 NALIAFYSKCKKMEKARRVFDELSDRDVISWNSII 5
           NALI  Y+KC  +E+AR VF ++  +D++SWN++I
Sbjct: 711 NALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMI 745



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 33/92 (35%), Positives = 54/92 (58%)
 Frame = -1

Query: 277  ESVLLFREMRKLGVEGNYYTFSCVLKCFGGLGSFVEGEETHGYVLRLGYGCSNRVGNALI 98
            E++ LF +M+K   + +  T +CVL    GL +  +G E HG++LR GY     V  AL+
Sbjct: 756  EALELFLDMQKQ-FKPDDITMACVLPACAGLAALDKGREIHGHILRRGYFSDLHVACALV 814

Query: 97   AFYSKCKKMEKARRVFDELSDRDVISWNSIIS 2
              Y+KC  +  A+ +FD +  +D+ISW  +I+
Sbjct: 815  DMYAKCGLLVLAQLLFDMIPKKDLISWTVMIA 846