BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040108
         (385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    40   2e-06

>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H;
            Endonuclease/exonuclease/phosphatase [Medicago
            truncatula]
          Length = 1246

 Score = 40.0 bits (92), Expect(2) = 2e-06
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 6/72 (8%)
 Frame = +1

Query: 184  RYYAKSAIWAGVKWALPKISCRAQWILGSGEKV--WRDCWVQQRL----QLQSELLKGCR 345
            RY+ KS++W GVK  +  +     WI+G+G+++  W + W+ + L     +         
Sbjct: 833  RYFVKSSVWHGVKNHMSILRQNKLWIVGTGDRINLWTNNWLGEPLVTLFNIDPFFHASFT 892

Query: 346  AKVSSIITDSTW 381
             KVS +I +  W
Sbjct: 893  GKVSEVIVNGNW 904



 Score = 36.2 bits (82), Expect(2) = 2e-06
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +3

Query: 21  KKRLVTVSWEKVCKPQEEGGLGIRRXXXXXXXXXXXXVWHIRFSDDDYSAFMRK 182
           K ++ TVSW+ +C+P  EGGL I+              W++  S+  ++  +++
Sbjct: 770 KPKVCTVSWKILCRPWSEGGLDIKSTRLINNAAMLKLAWNLLSSNSQWAVLLKR 823