BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040097
         (413 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002893907.1| predicted protein [Arabidopsis lyrata subsp....    75   5e-12
pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabi...    67   1e-09
gb|ABA96650.1| retrotransposon protein, putative, unclassified [...    66   3e-09
gb|EEC84131.1| hypothetical protein OsI_30475 [Oryza sativa Indi...    61   4e-09
gb|EEE69906.1| hypothetical protein OsJ_29747 [Oryza sativa Japo...    65   6e-09

>ref|XP_002893907.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
           gi|297339749|gb|EFH70166.1| predicted protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 110

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 35/91 (38%), Positives = 57/91 (62%)
 Frame = +1

Query: 40  YTGKCIVPASGISGGLTVFWKDNIQLDILGATPNHITGKLSNYHASSVWFFSFIYGEPIS 219
           Y    IV   G+SGGL +FWKD+  ++IL +    I  K+     S +++ S +YG+P++
Sbjct: 3   YKNAHIVDPEGLSGGLALFWKDSYNVEILFSDSRIIDAKVKL--GSLIFYISCVYGDPVA 60

Query: 220 YKRKRVWDELCDIAMLILGPWILFGDFNSII 312
           + R+ VWD+L DI++L   PW++ GD N I+
Sbjct: 61  HLRQIVWDKLIDISVLRNDPWLVLGDLNEIM 91


>pir||T00833 RNA-directed DNA polymerase homolog T13L16.7 - Arabidopsis thaliana
           (fragment)
          Length = 1365

 Score = 67.4 bits (163), Expect = 1e-09
 Identities = 31/84 (36%), Positives = 50/84 (59%)
 Frame = +1

Query: 58  VPASGISGGLTVFWKDNIQLDILGATPNHITGKLSNYHASSVWFFSFIYGEPISYKRKRV 237
           V   G SGGL +FWK +++++ L A  N +  ++S+   + VWF S +YG P+++ R ++
Sbjct: 58  VEPEGRSGGLAIFWKSHLEIEFLYADKNLMDLQVSS--RNKVWFISCVYGLPVTHMRPKL 115

Query: 238 WDELCDIAMLILGPWILFGDFNSI 309
           W+ L  I +     W L GDFN I
Sbjct: 116 WEHLNSIGLKRAEAWCLIGDFNDI 139


>gb|ABA96650.1| retrotransposon protein, putative, unclassified [Oryza sativa
           Japonica Group]
          Length = 1100

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 1/101 (0%)
 Frame = +1

Query: 43  TGKCIVPASGISGGLTVFWKDNIQLDILGATPNHITGKLSNYHASSVWFFSFIYGEPISY 222
           + +  V   G  GGL +FW ++  LD+L  T  HI   +    ++  W  +F+YGEP ++
Sbjct: 165 SSRAAVDGVGSGGGLALFWDESFHLDLLSYTNRHIDVLVKEDRSAMQWRCTFVYGEPKAH 224

Query: 223 KRKRVWDELCDIAMLILGPWILFGDFNSII-EFITFGKSRR 342
           +R  +W  L  I      PW L GDFN  + +F  F + +R
Sbjct: 225 ERHNMWTLLRRIKPNSTAPWCLMGDFNEAMWQFEHFSEHKR 265


>gb|EEC84131.1| hypothetical protein OsI_30475 [Oryza sativa Indica Group]
          Length = 296

 Score = 61.2 bits (147), Expect(2) = 4e-09
 Identities = 28/85 (32%), Positives = 45/85 (52%)
 Frame = +1

Query: 58  VPASGISGGLTVFWKDNIQLDILGATPNHITGKLSNYHASSVWFFSFIYGEPISYKRKRV 237
           V + G SG L +FWK N+ L +   + NHI   +       +W ++ +YGEP    RK  
Sbjct: 9   VDSDGASGSLALFWKKNLDLTVQSMSMNHIDAVVKEADGF-IWRYTGVYGEPRQGDRKNT 67

Query: 238 WDELCDIAMLILGPWILFGDFNSII 312
           W+ L  +   +  PW++ G+FN I+
Sbjct: 68  WELLRSLKTQMALPWVVSGNFNEIL 92



 Score = 24.3 bits (51), Expect(2) = 4e-09
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 329 EKVGGNGNQYRNMNSFNDFIDDLGLIDL 412
           EKVGG+      M++F D +++  L DL
Sbjct: 96  EKVGGSQRSESLMHNFRDALEECDLHDL 123


>gb|EEE69906.1| hypothetical protein OsJ_29747 [Oryza sativa Japonica Group]
          Length = 1139

 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 1/96 (1%)
 Frame = +1

Query: 58  VPASGISGGLTVFWKDNIQLDILGATPNHITGKLSNYHASSVWFFSFIYGEPISYKRKRV 237
           V   G+ GGL +FW + + +++L     HI   +       +W  +F+YGEP    R R+
Sbjct: 483 VSNEGMCGGLALFWHETVYVEVLNMNERHIDAYVRMTVDGPLWHVTFVYGEPCVENRHRM 542

Query: 238 WDELCDIAMLILGPWILFGDFNSII-EFITFGKSRR 342
           W  L DI      PW++ GDFN ++ ++  F K  R
Sbjct: 543 WSLLEDIRQSSDLPWLVMGDFNEVLWQYEHFSKRPR 578