BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040024
         (312 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002528032.1| pentatricopeptide repeat-containing protein,...   157   6e-37
emb|CBI31329.3| unnamed protein product [Vitis vinifera]              156   1e-36
ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containi...   156   1e-36
emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]   156   1e-36
ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containi...   154   9e-36

>ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532562|gb|EEF34350.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 730

 Score =  157 bits (398), Expect = 6e-37
 Identities = 72/101 (71%), Positives = 89/101 (88%)
 Frame = -3

Query: 310 GVEPNYVTIASILPLCARIANLQHGKELHCYILKRGQFEDFLLPWNSLVDTYSKSGKVSE 131
           G+EPNYVTIASILPLCAR+ANLQHGKE HCYIL+R  F+D+LL WNSLVD Y++SGKV E
Sbjct: 426 GIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSGKVLE 485

Query: 130 AQRVFSLMKKKDEVTYTSLIAGLGMQGEGQAAIELFEEMNK 8
           A+R+F  + ++DEVTYTSLIAG G+QGEG+ A++LF+EM K
Sbjct: 486 AKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKK 526



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
 Frame = -3

Query: 310 GVEPNYVTIASILPLCARIANLQHGKELHCYILKRGQFEDFLLPWN-----SLVDTYSKS 146
           G+ P+  T  S+L  C    ++  GK+LH  I          L WN     SLV  Y+K+
Sbjct: 189 GIRPDKFTYPSVLKACGEKLDIAFGKKLHASI------NASCLGWNLFVHNSLVSMYAKT 242

Query: 145 GKVSEAQRVFSLMKKKDEVTYTSLIAGLGMQGEGQAAIELFEEM 14
           G++S A+ +F  M ++D+V++ ++I+G   +G  + A ELF +M
Sbjct: 243 GELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKM 286


>emb|CBI31329.3| unnamed protein product [Vitis vinifera]
          Length = 753

 Score =  156 bits (395), Expect = 1e-36
 Identities = 70/100 (70%), Positives = 89/100 (89%)
 Frame = -3

Query: 310 GVEPNYVTIASILPLCARIANLQHGKELHCYILKRGQFEDFLLPWNSLVDTYSKSGKVSE 131
           G+EPNYVTIAS+LPLCAR+ANLQHGKE HCY+ +R  F+D LL WN+LVD Y++SGKV E
Sbjct: 388 GIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLE 447

Query: 130 AQRVFSLMKKKDEVTYTSLIAGLGMQGEGQAAIELFEEMN 11
           A+RVF ++ ++D++TYTS+IAG GMQGEGQAA++LFEEMN
Sbjct: 448 ARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMN 487


>ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  156 bits (395), Expect = 1e-36
 Identities = 70/100 (70%), Positives = 89/100 (89%)
 Frame = -3

Query: 310 GVEPNYVTIASILPLCARIANLQHGKELHCYILKRGQFEDFLLPWNSLVDTYSKSGKVSE 131
           G+EPNYVTIAS+LPLCAR+ANLQHGKE HCY+ +R  F+D LL WN+LVD Y++SGKV E
Sbjct: 433 GIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLE 492

Query: 130 AQRVFSLMKKKDEVTYTSLIAGLGMQGEGQAAIELFEEMN 11
           A+RVF ++ ++D++TYTS+IAG GMQGEGQAA++LFEEMN
Sbjct: 493 ARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMN 532



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 32/99 (32%), Positives = 51/99 (51%)
 Frame = -3

Query: 310 GVEPNYVTIASILPLCARIANLQHGKELHCYILKRGQFEDFLLPWNSLVDTYSKSGKVSE 131
           G+ P+  T  S+L  C    +L  GKE+H  I    + +  L+  N+L+  Y K GKV  
Sbjct: 196 GIRPDNFTYPSVLKACGEELDLGFGKEVHESI-NASRIKWSLIVHNALISMYGKCGKVGI 254

Query: 130 AQRVFSLMKKKDEVTYTSLIAGLGMQGEGQAAIELFEEM 14
           A+ +F  + ++D V++ S+I+     G    A ELF  M
Sbjct: 255 ARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSM 293


>emb|CAN80898.1| hypothetical protein VITISV_028645 [Vitis vinifera]
          Length = 822

 Score =  156 bits (395), Expect = 1e-36
 Identities = 70/100 (70%), Positives = 89/100 (89%)
 Frame = -3

Query: 310 GVEPNYVTIASILPLCARIANLQHGKELHCYILKRGQFEDFLLPWNSLVDTYSKSGKVSE 131
           G+EPNYVTIAS+LPLCAR+ANLQHGKE HCY+ +R  F+D LL WN+LVD Y++SGKV E
Sbjct: 507 GIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLE 566

Query: 130 AQRVFSLMKKKDEVTYTSLIAGLGMQGEGQAAIELFEEMN 11
           A+RVF ++ ++D++TYTS+IAG GMQGEGQAA++LFEEMN
Sbjct: 567 ARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMN 606



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 32/99 (32%), Positives = 51/99 (51%)
 Frame = -3

Query: 310 GVEPNYVTIASILPLCARIANLQHGKELHCYILKRGQFEDFLLPWNSLVDTYSKSGKVSE 131
           G+ P+  T  S+L  C    +L  GKE+H  I    + +  L+  N+L+  Y K GKV  
Sbjct: 270 GIRPDNFTYPSVLKACGEELDLGFGKEVHESI-NASRIKWSLIVHNALISMYGKCGKVGI 328

Query: 130 AQRVFSLMKKKDEVTYTSLIAGLGMQGEGQAAIELFEEM 14
           A+ +F  + ++D V++ S+I+     G    A ELF  M
Sbjct: 329 ARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSM 367


>ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  154 bits (388), Expect = 9e-36
 Identities = 70/101 (69%), Positives = 87/101 (86%)
 Frame = -3

Query: 310 GVEPNYVTIASILPLCARIANLQHGKELHCYILKRGQFEDFLLPWNSLVDTYSKSGKVSE 131
           G+EPNYVTIAS+LPLCARIANLQHGKE HCYI+K  QFE++LL WN+LVD YS+SG+V E
Sbjct: 413 GMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLE 472

Query: 130 AQRVFSLMKKKDEVTYTSLIAGLGMQGEGQAAIELFEEMNK 8
           A++VF  + K+DEVTYTS+I G GM+GEG+  ++LFEEM K
Sbjct: 473 ARKVFDSLTKRDEVTYTSMILGYGMKGEGETTLKLFEEMCK 513