BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00040007
         (561 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2...   173   2e-41
emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]   173   2e-41
emb|CBI36837.3| unnamed protein product [Vitis vinifera]              168   5e-40
ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|2...   152   5e-35
ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [...   150   2e-34

>ref|XP_002267393.1| PREDICTED: mismatch repair endonuclease PMS2-like [Vitis vinifera]
          Length = 937

 Score =  173 bits (438), Expect = 2e-41
 Identities = 93/179 (51%), Positives = 111/179 (62%), Gaps = 2/179 (1%)
 Frame = +2

Query: 2   FYFVNGRPVDMPKLSKLVNELYKSANSRQYPIAIMNFTVPTRSYDVNVTPDKRKIFFSDE 181
           F+FVNGRPVDMPK+ KLVNELYK ANSRQYPIAIMNFTVPTR+YDVNVTPDKRKIFFSDE
Sbjct: 269 FFFVNGRPVDMPKVGKLVNELYKGANSRQYPIAIMNFTVPTRAYDVNVTPDKRKIFFSDE 328

Query: 182 GLIMQSLRGAIEKIYSPSQCSYSTKKLEEPKKENGSSDLCTYPKKLHAPLTSXXXXXXXX 361
           G I+ SLR  +EKIYSPS  SYS  + EEP +E  +S+L     ++ +            
Sbjct: 329 GSILHSLREGLEKIYSPSLTSYSVNRFEEPTEETDNSELNPPQTQILSSSKQLFPDGSDL 388

Query: 362 XXXXXXXXXXXXG--PQGMFKKHLRDIHEGEGIVHKVDESPTEKDFSLKVHTIGNVDGF 532
                          P  M K    ++H  + + H  D+   EKDFSL+VH I   D F
Sbjct: 389 QEEAHSEEQITEDQIPSKMVKSSTENMHAVKEMDHSYDKDSIEKDFSLRVHGIKKADSF 447


>emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
          Length = 3804

 Score =  173 bits (438), Expect = 2e-41
 Identities = 95/181 (52%), Positives = 112/181 (61%), Gaps = 4/181 (2%)
 Frame = +2

Query: 2    FYFVNGRPVDMPKLSKLVNELYKSANSRQYPIAIMNFTVPTRSYDVNVTPDKRKIFFSDE 181
            F+FVNGRPVDMPK+ KLVNELYK ANSRQYPIAIMNFTVPTR+YDVNVTPDKRKIFFSDE
Sbjct: 2968 FFFVNGRPVDMPKVGKLVNELYKGANSRQYPIAIMNFTVPTRAYDVNVTPDKRKIFFSDE 3027

Query: 182  GLIMQSLRGAIEKIYSPSQCSYSTKKLEEPKKENGSSDLCTYPKKLHAPLTSXXXXXXXX 361
            G I+ SLR  +EKIYSPS  SYS  + EEP +E  +S+L   P +     +S        
Sbjct: 3028 GSILHSLREGLEKIYSPSLTSYSVNRFEEPTEETBNSEL--NPPQTQILXSSKQLFPDGS 3085

Query: 362  XXXXXXXXXXXXG----PQGMFKKHLRDIHEGEGIVHKVDESPTEKDFSLKVHTIGNVDG 529
                             P  M K    ++H  + + H  D+   EKDFSL+VH I   D 
Sbjct: 3086 DLQEEAHSEEQITEDQIPSKMVKSSTENMHAVKEMDHSYDKDSIEKDFSLRVHGIKKADS 3145

Query: 530  F 532
            F
Sbjct: 3146 F 3146


>emb|CBI36837.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  168 bits (426), Expect = 5e-40
 Identities = 90/171 (52%), Positives = 108/171 (63%), Gaps = 2/171 (1%)
 Frame = +2

Query: 2   FYFVNGRPVDMPKLSKLVNELYKSANSRQYPIAIMNFTVPTRSYDVNVTPDKRKIFFSDE 181
           F+FVNGRPVDMPK+ KLVNELYK ANSRQYPIAIMNFTVPTR+YDVNVTPDKRKIFFSDE
Sbjct: 269 FFFVNGRPVDMPKVGKLVNELYKGANSRQYPIAIMNFTVPTRAYDVNVTPDKRKIFFSDE 328

Query: 182 GLIMQSLRGAIEKIYSPSQCSYSTKKLEEPKKENGSSDLCTYPKKLHAPLTSXXXXXXXX 361
           G I+ SLR  +EKIYSPS  SYS  + EEP +E  +S+L     ++ +            
Sbjct: 329 GSILHSLREGLEKIYSPSLTSYSVNRFEEPTEETDNSELNPPQTQILSSSKQLFPDGSDL 388

Query: 362 XXXXXXXXXXXXG--PQGMFKKHLRDIHEGEGIVHKVDESPTEKDFSLKVH 508
                          P  M K    ++H  + + H  D+   EKDFSL+VH
Sbjct: 389 QEEAHSEEQITEDQIPSKMVKSSTENMHAVKEMDHSYDKDSIEKDFSLRVH 439


>ref|XP_002321013.1| predicted protein [Populus trichocarpa] gi|222861786|gb|EEE99328.1|
           predicted protein [Populus trichocarpa]
          Length = 915

 Score =  152 bits (383), Expect = 5e-35
 Identities = 84/175 (48%), Positives = 103/175 (58%)
 Frame = +2

Query: 2   FYFVNGRPVDMPKLSKLVNELYKSANSRQYPIAIMNFTVPTRSYDVNVTPDKRKIFFSDE 181
           +YFVNGRPVDMPK+SKLVNELYK ANSRQYPIAIMNFT+PT + DVNVTPDKRKIFFSDE
Sbjct: 265 YYFVNGRPVDMPKVSKLVNELYKGANSRQYPIAIMNFTIPTTACDVNVTPDKRKIFFSDE 324

Query: 182 GLIMQSLRGAIEKIYSPSQCSYSTKKLEEPKKENGSSDLCTYPKKLHAPLTSXXXXXXXX 361
             I+ +LR  +EK YS S   YS  K E   K   SS LC+  +K  + + S        
Sbjct: 325 SSILLALREGLEKNYSSSNSCYSVNKFENHAKAADSSQLCSPREK--SNMLSKQSSANGN 382

Query: 362 XXXXXXXXXXXXGPQGMFKKHLRDIHEGEGIVHKVDESPTEKDFSLKVHTIGNVD 526
                        P    +   +    GE  +H ++E    KDF+L++H I   D
Sbjct: 383 DSEETQTDAEDSSPLMTVEVKSKPFQVGERSIHDIEEKFMMKDFALRLHGIKKTD 437


>ref|XP_002523056.1| DNA mismatch repair protein pms2, putative [Ricinus communis]
           gi|223537618|gb|EEF39241.1| DNA mismatch repair protein
           pms2, putative [Ricinus communis]
          Length = 924

 Score =  150 bits (378), Expect = 2e-34
 Identities = 88/188 (46%), Positives = 108/188 (57%), Gaps = 3/188 (1%)
 Frame = +2

Query: 2   FYFVNGRPVDMPKLSKLVNELYKSANSRQYPIAIMNFTVPTRSYDVNVTPDKRKIFFSDE 181
           +YFVNGRPVDMPK++KLVNELY+ ANSRQYPIAIMNF VPTR+ DVNVTPDKRKIFFSDE
Sbjct: 266 YYFVNGRPVDMPKVTKLVNELYRGANSRQYPIAIMNFIVPTRACDVNVTPDKRKIFFSDE 325

Query: 182 GLIMQSLRGAIEKIYSPSQCSYSTKKLEEPKKENGSSDLCTYPKK---LHAPLTSXXXXX 352
             I+ +LR  ++ IYSPS  SYS  K EE  K   +S  C+  +K   L   L++     
Sbjct: 326 TSILHALREGLQNIYSPSNASYSVNKFEERIKAASNSQSCSPHEKSLVLSKQLSAVSNDA 385

Query: 353 XXXXXXXXXXXXXXXGPQGMFKKHLRDIHEGEGIVHKVDESPTEKDFSLKVHTIGNVDGF 532
                                K H  ++ E        DE    KDF+L+VH I  V  F
Sbjct: 386 EEILVEEHTSDGSNLLQTVKMKSHPSNVGENR------DEKRISKDFTLRVHDIPKVYSF 439

Query: 533 FSYSPNQL 556
            + +  QL
Sbjct: 440 PNSNNRQL 447