BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039980
         (565 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003600606.1| DNA polymerase alpha-associated DNA helicase...    63   4e-08
dbj|BAM64828.1| hypothetical protein [Beta vulgaris]                   62   6e-08
ref|XP_002311565.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06

>ref|XP_003600606.1| DNA polymerase alpha-associated DNA helicase A [Medicago
           truncatula] gi|355489654|gb|AES70857.1| DNA polymerase
           alpha-associated DNA helicase A [Medicago truncatula]
          Length = 950

 Score = 62.8 bits (151), Expect = 4e-08
 Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 14/182 (7%)
 Frame = -3

Query: 560 FSYVNHYLESFCYPLIEEARSVLSTCLFAVSDAPFVGMIVERCNVSEGFTNDGNNIFSFS 381
           F  V +YL SF   L+EE  S LS+ L+ V+ APF  +++     S+ F +    ++  S
Sbjct: 44  FMTVTNYLNSFIPSLVEETHSDLSSSLYGVNRAPFCEILIATPERSKSFISSKFLLYQIS 103

Query: 380 L----YNGERRGHYEPKVGDIVLLSTSVPKDYEEIRQGIRPSCLAVVDLIGNGNGKQWGK 213
           +     + E  G Y+P+VGD++ L+   PK  E++ +  R   +A V     G+ +  G+
Sbjct: 104 VSRTKNDTEDVGPYQPEVGDLIALTDFKPKTVEDLNRPRRYYHIAYV----YGSKESSGE 159

Query: 212 LGKFGSEEI----------KGGGSSYVAIYLMNFTETSHIRTTLNVDTTDPHLNLNLIKK 63
           +    S+ I                  A+YL+N T    I   LN +       +N+IKK
Sbjct: 160 ISILSSKCIDMEVDSNYLRSNNAPKLYAVYLLNLTTNIRIWKALNSELEG--AKMNMIKK 217

Query: 62  AL 57
            L
Sbjct: 218 VL 219


>dbj|BAM64828.1| hypothetical protein [Beta vulgaris]
          Length = 1296

 Score = 62.0 bits (149), Expect = 6e-08
 Identities = 53/175 (30%), Positives = 81/175 (46%), Gaps = 7/175 (4%)
 Frame = -3

Query: 560 FSYVNHYLESFCYPLIEEARSVLSTCLFAVSDAPFVGMIVERCNVSEGFTNDGN---NIF 390
           FS   HY  +F  PL EE R+ L + + +V +AP     + R  +S+ +        NI 
Sbjct: 172 FSSTAHYTSAFEKPLAEETRASLCSGMESVGNAP--ACEISRIELSKDYNPPKELYYNIL 229

Query: 389 SFSLYNGERRG-HYEPKVGDIVLLSTSVPKDYEEIRQGIRPSCLAVVDLIGNGNGKQWGK 213
           S  + + +  G HYEP+ GD+++LS   P+  E++    +P  +A V  +  G+      
Sbjct: 230 SKKIADFKNNGGHYEPETGDLIVLSNIKPRRIEDLNVPGKPFAVAFVTTMEEGSDMTRIL 289

Query: 212 LGKFGSEEIKGGGSSYV---AIYLMNFTETSHIRTTLNVDTTDPHLNLNLIKKAL 57
           L K  S E+K      V   A YL+N      I   LN D     L++N   KAL
Sbjct: 290 LSKDISSELKPKPEKRVRVFATYLINLVTNMRIWRALNPDPQG--LSMNFALKAL 342


>ref|XP_002311565.1| predicted protein [Populus trichocarpa] gi|222851385|gb|EEE88932.1|
           predicted protein [Populus trichocarpa]
          Length = 224

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 51/177 (28%), Positives = 79/177 (44%), Gaps = 7/177 (3%)
 Frame = -3

Query: 551 VNHYLESFCYPLIEEARSVLSTCLFAVSDAPFVGMIVERCNVSEG-FTNDGNNIFSFSLY 375
           V HYL S+  PL+EE R+ LS+ +  +S APF  M+        G    D N  +  +  
Sbjct: 53  VEHYLGSYVIPLLEETRAQLSSSMDIISRAPFAEMVAFFEAKPHGTLLYDVNIDYWRNRS 112

Query: 374 NGERRGHYEPKVGDIVLLSTSVPKDYEEIRQGIRPSCLAVVDLIGNGNGKQWGKLGKFGS 195
            G    HY+   GDIV+L+++ P++  ++++       AVV  I     +       F  
Sbjct: 113 RGSGNEHYKTLPGDIVILTSAKPENVSDLQRVGWTWTFAVVTRITGDETEDAATYTSFTV 172

Query: 194 EEIK------GGGSSYVAIYLMNFTETSHIRTTLNVDTTDPHLNLNLIKKALCRKSL 42
           +  K      G   S   I L N T +  I   L++       NLN+IK+ LC  S+
Sbjct: 173 KAQKDIEISDGLQKSLTVISLTNITTSKRIWNALHM-----FGNLNIIKEILCTDSV 224