BLASTX nr result
ID: Coptis25_contig00039979
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00039979
(430 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|2... 213 1e-53
ref|XP_002512521.1| pentatricopeptide repeat-containing protein,... 204 5e-51
ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containi... 198 3e-49
ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containi... 198 3e-49
ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containi... 190 1e-46
>ref|XP_002330082.1| predicted protein [Populus trichocarpa] gi|222871507|gb|EEF08638.1|
predicted protein [Populus trichocarpa]
Length = 665
Score = 213 bits (542), Expect = 1e-53
Identities = 98/142 (69%), Positives = 118/142 (83%)
Frame = -3
Query: 428 NAMIDGYFKCGDVDAARGLFESMEHKTVGSWNTMISGYAKCGRIEDAKELFMEMPARDDV 249
NAMIDGY KCG+V+AA+ LF SME K VGSWN M+SG AKCG IE+A+ELF EM ++++
Sbjct: 200 NAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSGMAKCGMIEEARELFNEMKEKNEI 259
Query: 248 SWSAMIDGYMKGGYCKEALAIFQEMQNQGVRPKKFVLSSALAACANVGSFDQGRWIHAYL 69
SWSAMIDGY+KGGY KEAL +F MQ + +RP+KFVLSS LAACAN+G+ DQGRWIHAY+
Sbjct: 260 SWSAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYV 319
Query: 68 RRNSIRVDAILGTSLVDMYAKC 3
NS DA+LGT+LVDMYAKC
Sbjct: 320 NNNSNSFDAVLGTALVDMYAKC 341
Score = 65.9 bits (159), Expect = 3e-09
Identities = 43/152 (28%), Positives = 67/152 (44%), Gaps = 39/152 (25%)
Frame = -3
Query: 428 NAMIDGYFKCGDVDAARGLFESMEHKTV----------------------GSW------- 336
+AMIDGY K G A +F M+ + + G W
Sbjct: 262 SAMIDGYIKGGYYKEALEVFNVMQREEIRPRKFVLSSVLAACANLGALDQGRWIHAYVNN 321
Query: 335 ----------NTMISGYAKCGRIEDAKELFMEMPARDDVSWSAMIDGYMKGGYCKEALAI 186
++ YAKCGR++ A ++F +M ++ +W+AMI G G ++A+ +
Sbjct: 322 NSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKMEKKEVFTWNAMICGLGMHGRAEDAIEL 381
Query: 185 FQEMQNQGVRPKKFVLSSALAACANVGSFDQG 90
F +MQ Q RP L L+ACA+ G D+G
Sbjct: 382 FFKMQKQKFRPNGITLLGVLSACAHSGMVDEG 413
>ref|XP_002512521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223548482|gb|EEF49973.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 422
Score = 204 bits (520), Expect = 5e-51
Identities = 92/142 (64%), Positives = 120/142 (84%)
Frame = -3
Query: 428 NAMIDGYFKCGDVDAARGLFESMEHKTVGSWNTMISGYAKCGRIEDAKELFMEMPARDDV 249
NAMIDGY+K GDVD+A+ LFE ME ++VGSWN M+SG AK G +++A+ELF +M +D++
Sbjct: 199 NAMIDGYYKFGDVDSAKELFEKMEDRSVGSWNVMVSGLAKNGMVKEARELFNDMREKDEI 258
Query: 248 SWSAMIDGYMKGGYCKEALAIFQEMQNQGVRPKKFVLSSALAACANVGSFDQGRWIHAYL 69
SWS+MIDGY+KGG KEAL +F MQ + +RPKKFVLSS LAACAN+G+ DQGRWIHAY+
Sbjct: 259 SWSSMIDGYIKGGNYKEALEVFNVMQEEKIRPKKFVLSSVLAACANLGALDQGRWIHAYV 318
Query: 68 RRNSIRVDAILGTSLVDMYAKC 3
++N + +DA+LGT+LVDMYAKC
Sbjct: 319 KKNPMYLDAVLGTALVDMYAKC 340
Score = 62.4 bits (150), Expect = 4e-08
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 39/152 (25%)
Frame = -3
Query: 428 NAMIDGYFKCGDVDAARGLFESMEHKTV----------------------GSW------- 336
++MIDGY K G+ A +F M+ + + G W
Sbjct: 261 SSMIDGYIKGGNYKEALEVFNVMQEEKIRPKKFVLSSVLAACANLGALDQGRWIHAYVKK 320
Query: 335 ----------NTMISGYAKCGRIEDAKELFMEMPARDDVSWSAMIDGYMKGGYCKEALAI 186
++ YAKCGR++ A ++F M ++ +W+AMI G G ++A+ +
Sbjct: 321 NPMYLDAVLGTALVDMYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKL 380
Query: 185 FQEMQNQGVRPKKFVLSSALAACANVGSFDQG 90
F +MQ + VR + L ACA+ G D+G
Sbjct: 381 FLKMQKEKVRSNEITFVGLLNACAHKGMVDEG 412
Score = 60.8 bits (146), Expect = 1e-07
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Frame = -3
Query: 425 AMIDGYFKCGDVDAARGLFESMEHKTVGSWNTMISGYAKCGRIEDAKELFMEMPAR---- 258
A++D Y KCG +D A +FE+M+ K V +WN MI G A GR EDA +LF++M
Sbjct: 332 ALVDMYAKCGRLDMAWDVFETMKEKEVFTWNAMICGLAMHGRAEDAIKLFLKMQKEKVRS 391
Query: 257 DDVSWSAMIDGYMKGGYCKEALAIFQEMQ 171
+++++ +++ G E L I M+
Sbjct: 392 NEITFVGLLNACAHKGMVDEGLNILDSME 420
>ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 198 bits (504), Expect = 3e-49
Identities = 88/142 (61%), Positives = 115/142 (80%)
Frame = -3
Query: 428 NAMIDGYFKCGDVDAARGLFESMEHKTVGSWNTMISGYAKCGRIEDAKELFMEMPARDDV 249
N MIDGY KCG ++AA+GLF M K +GSWN MI+G AK G + DA++LF EM RD++
Sbjct: 201 NTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEI 260
Query: 248 SWSAMIDGYMKGGYCKEALAIFQEMQNQGVRPKKFVLSSALAACANVGSFDQGRWIHAYL 69
SWS+M+DGY+ G KEAL IFQ+MQ + RP +F+LSS LAAC+N+G+ DQGRW+HAYL
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320
Query: 68 RRNSIRVDAILGTSLVDMYAKC 3
+RNSI++DA+LGT+L+DMYAKC
Sbjct: 321 KRNSIKLDAVLGTALLDMYAKC 342
Score = 65.5 bits (158), Expect = 4e-09
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 39/160 (24%)
Frame = -3
Query: 428 NAMIDGYFKCGDVDAARGLFESMEHKTV----------------------GSW------- 336
++M+DGY G A +F+ M+ + G W
Sbjct: 263 SSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKR 322
Query: 335 ----------NTMISGYAKCGRIEDAKELFMEMPARDDVSWSAMIDGYMKGGYCKEALAI 186
++ YAKCGR++ E+F EM R+ +W+AMI G G ++AL +
Sbjct: 323 NSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALEL 382
Query: 185 FQEMQNQGVRPKKFVLSSALAACANVGSFDQGRWIHAYLR 66
F ++Q ++P L L ACA+ G D+G I +R
Sbjct: 383 FSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMR 422
Score = 57.4 bits (137), Expect = 1e-06
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Frame = -3
Query: 425 AMIDGYFKCGDVDAARGLFESMEHKTVGSWNTMISGYAKCGRIEDAKELFMEMP----AR 258
A++D Y KCG +D +FE M+ + + +WN MI G A GR EDA ELF ++
Sbjct: 334 ALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKP 393
Query: 257 DDVSWSAMIDGYMKGGYCKEALAIFQEMQN-QGVRPK 150
+ ++ ++ G+ + L IFQ M+ GV P+
Sbjct: 394 NGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPE 430
>ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g48910-like [Cucumis sativus]
Length = 666
Score = 198 bits (504), Expect = 3e-49
Identities = 88/142 (61%), Positives = 115/142 (80%)
Frame = -3
Query: 428 NAMIDGYFKCGDVDAARGLFESMEHKTVGSWNTMISGYAKCGRIEDAKELFMEMPARDDV 249
N MIDGY KCG ++AA+GLF M K +GSWN MI+G AK G + DA++LF EM RD++
Sbjct: 201 NTMIDGYLKCGVLEAAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEI 260
Query: 248 SWSAMIDGYMKGGYCKEALAIFQEMQNQGVRPKKFVLSSALAACANVGSFDQGRWIHAYL 69
SWS+M+DGY+ G KEAL IFQ+MQ + RP +F+LSS LAAC+N+G+ DQGRW+HAYL
Sbjct: 261 SWSSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYL 320
Query: 68 RRNSIRVDAILGTSLVDMYAKC 3
+RNSI++DA+LGT+L+DMYAKC
Sbjct: 321 KRNSIKLDAVLGTALLDMYAKC 342
Score = 65.5 bits (158), Expect = 4e-09
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 39/160 (24%)
Frame = -3
Query: 428 NAMIDGYFKCGDVDAARGLFESMEHKTV----------------------GSW------- 336
++M+DGY G A +F+ M+ + G W
Sbjct: 263 SSMVDGYISAGRYKEALEIFQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKR 322
Query: 335 ----------NTMISGYAKCGRIEDAKELFMEMPARDDVSWSAMIDGYMKGGYCKEALAI 186
++ YAKCGR++ E+F EM R+ +W+AMI G G ++AL +
Sbjct: 323 NSIKLDAVLGTALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALEL 382
Query: 185 FQEMQNQGVRPKKFVLSSALAACANVGSFDQGRWIHAYLR 66
F ++Q ++P L L ACA+ G D+G I +R
Sbjct: 383 FSKLQEGRMKPNGITLVGVLTACAHAGFVDKGLRIFQTMR 422
Score = 57.4 bits (137), Expect = 1e-06
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 5/97 (5%)
Frame = -3
Query: 425 AMIDGYFKCGDVDAARGLFESMEHKTVGSWNTMISGYAKCGRIEDAKELFMEMP----AR 258
A++D Y KCG +D +FE M+ + + +WN MI G A GR EDA ELF ++
Sbjct: 334 ALLDMYAKCGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKP 393
Query: 257 DDVSWSAMIDGYMKGGYCKEALAIFQEMQN-QGVRPK 150
+ ++ ++ G+ + L IFQ M+ GV P+
Sbjct: 394 NGITLVGVLTACAHAGFVDKGLRIFQTMREFYGVDPE 430
>ref|XP_002281942.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910
isoform 1 [Vitis vinifera]
Length = 672
Score = 190 bits (482), Expect = 1e-46
Identities = 87/143 (60%), Positives = 114/143 (79%), Gaps = 1/143 (0%)
Frame = -3
Query: 428 NAMIDGYFKCGDVDAARGLFESMEHKT-VGSWNTMISGYAKCGRIEDAKELFMEMPARDD 252
NAMIDGY + G+V+AAR LFE M ++ + +WN MISG+++CG +E A+E F EM RD+
Sbjct: 208 NAMIDGYLRFGEVEAARELFEGMPDRSMISTWNAMISGFSRCGMVEVAREFFDEMKERDE 267
Query: 251 VSWSAMIDGYMKGGYCKEALAIFQEMQNQGVRPKKFVLSSALAACANVGSFDQGRWIHAY 72
+SWSAMIDGY++ G EAL IF +MQ + +RP+KFVL S L+ACAN+G+ DQGRWIH Y
Sbjct: 268 ISWSAMIDGYIQEGCFMEALEIFHQMQKEKIRPRKFVLPSVLSACANLGALDQGRWIHTY 327
Query: 71 LRRNSIRVDAILGTSLVDMYAKC 3
+RNSI++D +LGTSLVDMYAKC
Sbjct: 328 AKRNSIQLDGVLGTSLVDMYAKC 350
Score = 70.5 bits (171), Expect = 1e-10
Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 2/94 (2%)
Frame = -3
Query: 425 AMIDGYFKCGDVDAARGLFESMEHKTVGSWNTMISGYAKCGRIEDAKELFMEMPAR-DDV 249
+++D Y KCG +D A +FE M +K V SWN MI G A GR EDA +LF +M +++
Sbjct: 342 SLVDMYAKCGRIDLAWEVFEKMSNKEVSSWNAMIGGLAMHGRAEDAIDLFSKMDINPNEI 401
Query: 248 SWSAMIDGYMKGGYCKEALAIFQEMQNQ-GVRPK 150
++ +++ GG ++ L IF M+ + GV P+
Sbjct: 402 TFVGVLNACAHGGLVQKGLTIFNSMRKEYGVEPQ 435