BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039969
         (332 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containi...   131   6e-29
emb|CBI26593.3| unnamed protein product [Vitis vinifera]              125   5e-27
ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containi...   125   5e-27
ref|XP_002307076.1| predicted protein [Populus trichocarpa] gi|2...   122   2e-26
ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containi...   121   7e-26

>ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Cucumis sativus]
          Length = 784

 Score =  131 bits (329), Expect = 6e-29
 Identities = 60/110 (54%), Positives = 85/110 (77%), Gaps = 3/110 (2%)
 Frame = -1

Query: 323 NNLFSNPIPDLKSLLKYHALIITSSHTNNIFISAKLISFYSFYNKPTFSTHVFNALEFKD 144
           ++ FS P    +SLL++H+LIIT+ ++NN+F + KL++FY+++ KP FSTH+F  +  KD
Sbjct: 43  HSFFSKPNLTFQSLLQFHSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKD 102

Query: 143 TFLWNSIIKTHFSNGYYQQALDFFLQM---PCVPNVFTVPIVVSCCAELL 3
            FLWNSII++HFSNG YQ+A DF+LQM     +PN FTVP+VVS CAEL+
Sbjct: 103 IFLWNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELM 152


>emb|CBI26593.3| unnamed protein product [Vitis vinifera]
          Length = 459

 Score =  125 bits (313), Expect = 5e-27
 Identities = 60/109 (55%), Positives = 82/109 (75%), Gaps = 3/109 (2%)
 Frame = -1

Query: 323 NNLFSNPIPDLKSLLKYHALIITSSHTNNIFISAKLISFYSFYNKPTFSTHVFNALEFKD 144
           N+L SN I  LK+LL+ HA IITS ++NNIFI++KLIS Y+ ++KP+ ST +F+ +  +D
Sbjct: 38  NHLLSNQISSLKTLLQSHAFIITSGYSNNIFIASKLISLYASFHKPSCSTELFDEIPHRD 97

Query: 143 TFLWNSIIKTHFSNGYYQQALDFFLQM---PCVPNVFTVPIVVSCCAEL 6
            FLWNSIIK HFSNG Y +ALDF+  M     +PN FT+P++V+ CAEL
Sbjct: 98  AFLWNSIIKAHFSNGEYSRALDFYQWMRASEALPNHFTIPMIVASCAEL 146


>ref|XP_002276015.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  125 bits (313), Expect = 5e-27
 Identities = 60/109 (55%), Positives = 82/109 (75%), Gaps = 3/109 (2%)
 Frame = -1

Query: 323 NNLFSNPIPDLKSLLKYHALIITSSHTNNIFISAKLISFYSFYNKPTFSTHVFNALEFKD 144
           N+L SN I  LK+LL+ HA IITS ++NNIFI++KLIS Y+ ++KP+ ST +F+ +  +D
Sbjct: 38  NHLLSNQISSLKTLLQSHAFIITSGYSNNIFIASKLISLYASFHKPSCSTELFDEIPHRD 97

Query: 143 TFLWNSIIKTHFSNGYYQQALDFFLQM---PCVPNVFTVPIVVSCCAEL 6
            FLWNSIIK HFSNG Y +ALDF+  M     +PN FT+P++V+ CAEL
Sbjct: 98  AFLWNSIIKAHFSNGEYSRALDFYQWMRASEALPNHFTIPMIVASCAEL 146


>ref|XP_002307076.1| predicted protein [Populus trichocarpa] gi|222856525|gb|EEE94072.1|
           predicted protein [Populus trichocarpa]
          Length = 733

 Score =  122 bits (307), Expect = 2e-26
 Identities = 61/110 (55%), Positives = 81/110 (73%), Gaps = 3/110 (2%)
 Frame = -1

Query: 323 NNLFSNPIPDLKSLLKYHALIITSSHTNNIFISAKLISFYSFYNKPTFSTHVFNALEFKD 144
           ++  SN    L+SL K HALIIT+ + NN+FIS+KLIS Y+ + KP  ST+VF++   KD
Sbjct: 35  DSFLSNQTQTLQSLHKSHALIITTGNANNVFISSKLISLYASFRKPHSSTYVFDSTNQKD 94

Query: 143 TFLWNSIIKTHFSNGYYQQALDFFLQM---PCVPNVFTVPIVVSCCAELL 3
           TFLWNSIIK+HFSNG Y +A DF++QM      PN FT+P++V+ CAELL
Sbjct: 95  TFLWNSIIKSHFSNGNYFKAFDFYIQMRYDNTPPNQFTIPMIVATCAELL 144


>ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Cucumis sativus]
          Length = 754

 Score =  121 bits (303), Expect = 7e-26
 Identities = 54/94 (57%), Positives = 75/94 (79%), Gaps = 3/94 (3%)
 Frame = -1

Query: 275 YHALIITSSHTNNIFISAKLISFYSFYNKPTFSTHVFNALEFKDTFLWNSIIKTHFSNGY 96
           +H+LIIT+ ++NN+F + KL++FY+++ KP FSTH+F  +  KD FLWNSII++HFSNG 
Sbjct: 29  FHSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFSNGD 88

Query: 95  YQQALDFFLQM---PCVPNVFTVPIVVSCCAELL 3
           YQ+A DF+LQM     +PN FTVP+VVS CAEL+
Sbjct: 89  YQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELM 122