BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039939
         (258 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containi...   131   5e-29
emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]   131   5e-29
ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containi...   119   3e-25
ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   116   2e-24
ref|XP_002532584.1| pentatricopeptide repeat-containing protein,...   115   3e-24

>ref|XP_002269136.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71210-like [Vitis vinifera]
          Length = 881

 Score =  131 bits (330), Expect = 5e-29
 Identities = 60/84 (71%), Positives = 74/84 (88%)
 Frame = -3

Query: 253 EGRISPDKVTMNAAMCFFCKAGMVDVTLDLYHSRSDFGLSLNNLANNYLINTLCGDGSVD 74
           EG+I PDKVTMNA +CFFCKAGMVDV L+LY+SR++FGLS N++A NYLINTLCGDGS D
Sbjct: 381 EGQILPDKVTMNAVLCFFCKAGMVDVALELYNSRAEFGLSPNSMAYNYLINTLCGDGSTD 440

Query: 73  DAYRVLQDSIKLGYFPGRRTSSIL 2
           +AY VL+ S++ GYFPG++T SIL
Sbjct: 441 EAYHVLKHSLEQGYFPGKKTFSIL 464


>emb|CAN76479.1| hypothetical protein VITISV_028175 [Vitis vinifera]
          Length = 1173

 Score =  131 bits (330), Expect = 5e-29
 Identities = 60/84 (71%), Positives = 74/84 (88%)
 Frame = -3

Query: 253 EGRISPDKVTMNAAMCFFCKAGMVDVTLDLYHSRSDFGLSLNNLANNYLINTLCGDGSVD 74
           EG+I PDKVTMNA +CFFCKAGMVDV L+LY+SR++FGLS N++A NYLINTLCGDGS D
Sbjct: 381 EGQILPDKVTMNAVLCFFCKAGMVDVALELYNSRAEFGLSPNSMAYNYLINTLCGDGSTD 440

Query: 73  DAYRVLQDSIKLGYFPGRRTSSIL 2
           +AY VL+ S++ GYFPG++T SIL
Sbjct: 441 EAYHVLKHSLEQGYFPGKKTFSIL 464


>ref|XP_004144802.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71210-like [Cucumis sativus]
          Length = 913

 Score =  119 bits (297), Expect = 3e-25
 Identities = 56/85 (65%), Positives = 69/85 (81%)
 Frame = -3

Query: 256 MEGRISPDKVTMNAAMCFFCKAGMVDVTLDLYHSRSDFGLSLNNLANNYLINTLCGDGSV 77
           M+  ISPDKVTM+AAMCF CKAGMV+V L+LY+S  +FG+S N +A NYLIN LC DGS 
Sbjct: 404 MDQHISPDKVTMDAAMCFLCKAGMVEVALELYNSNFEFGISPNTMAYNYLINALCRDGST 463

Query: 76  DDAYRVLQDSIKLGYFPGRRTSSIL 2
           D+AYR+L+ SI  GYFPG++T SIL
Sbjct: 464 DEAYRILKCSIYEGYFPGKKTFSIL 488


>ref|XP_004172369.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g71210-like, partial [Cucumis sativus]
          Length = 889

 Score =  116 bits (291), Expect = 2e-24
 Identities = 55/85 (64%), Positives = 68/85 (80%)
 Frame = -3

Query: 256 MEGRISPDKVTMNAAMCFFCKAGMVDVTLDLYHSRSDFGLSLNNLANNYLINTLCGDGSV 77
           M+  ISPDKVTM+AAMCF CKAGMV+V L+LY+S  +FG+S N +A NYLIN LC DGS 
Sbjct: 380 MDQHISPDKVTMDAAMCFLCKAGMVEVALELYNSNFEFGISPNTMAYNYLINALCRDGST 439

Query: 76  DDAYRVLQDSIKLGYFPGRRTSSIL 2
           D+AYR+L+ SI  GYFPG++  SIL
Sbjct: 440 DEAYRILKCSIYEGYFPGKKXFSIL 464


>ref|XP_002532584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527693|gb|EEF29801.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 895

 Score =  115 bits (289), Expect = 3e-24
 Identities = 55/85 (64%), Positives = 68/85 (80%)
 Frame = -3

Query: 256 MEGRISPDKVTMNAAMCFFCKAGMVDVTLDLYHSRSDFGLSLNNLANNYLINTLCGDGSV 77
           ME   SPDKVTMNAA+ FFCKAGMVDV LDLY+ +S+FGLS + +  NYLIN+LC +G+V
Sbjct: 394 MEDGFSPDKVTMNAALSFFCKAGMVDVALDLYNCKSEFGLSPSTMTCNYLINSLCREGNV 453

Query: 76  DDAYRVLQDSIKLGYFPGRRTSSIL 2
           DDAY VL+ S + GYFPG+R  S+L
Sbjct: 454 DDAYHVLKSSSEHGYFPGKRAFSML 478