BLASTX nr result

ID: Coptis25_contig00039935 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039935
         (511 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266989.1| PREDICTED: uncharacterized protein LOC100248...    64   2e-08
ref|XP_002329220.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06

>ref|XP_002266989.1| PREDICTED: uncharacterized protein LOC100248425 [Vitis vinifera]
           gi|297736648|emb|CBI25519.3| unnamed protein product
           [Vitis vinifera]
          Length = 323

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 49/159 (30%), Positives = 65/159 (40%), Gaps = 15/159 (9%)
 Frame = -3

Query: 437 YPGNEEGFQLKDEGNGISLGTGNGSFSSQSHNQT-----ENYTQPQTQMSSVYDPRPNFY 273
           Y G EEGF+L D  +GI+L   + S  +    +      +    PQT     +       
Sbjct: 150 YSGKEEGFELMDHSSGITLAPADASTQAYPPQRPLAPLGQPQNPPQTNFPYSHPMPFPTN 209

Query: 272 GKQSSVGDPNYXXXXXXXXXXXPS----------HVGYLPTFLPRTDQLAGTWVNLXXXX 123
               ++G P+Y            S          +VGY+PTFLPRTD L GT+VN+    
Sbjct: 210 NSNPALGGPSYPSAGGTSYPPPRSPPPPPPPPPSNVGYIPTFLPRTDHLPGTYVNM---P 266

Query: 122 XXXXXXXXXXXPNFXXXXXXXXXXXXAVIFGDDFMSGFE 6
                      P F            AVIFGDDFMSGF+
Sbjct: 267 PSGSGAGSSRGPGFGMGVGAGALAAGAVIFGDDFMSGFD 305


>ref|XP_002329220.1| predicted protein [Populus trichocarpa] gi|222871001|gb|EEF08132.1|
           predicted protein [Populus trichocarpa]
          Length = 314

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 51/156 (32%), Positives = 64/156 (41%), Gaps = 11/156 (7%)
 Frame = -3

Query: 437 YPGNEEGFQLKDEGNGISLGTGNGSFSSQSHNQTENYTQPQTQMSSV-YD---PRPNFYG 270
           YPGNE G  L D  N I+L T     +  S     +  QP+   SSV Y+   P P  Y 
Sbjct: 149 YPGNEGGIMLMDHNNKITLPTEGSGKAFPSELPLGSLRQPENHPSSVAYNHPLPYPANYS 208

Query: 269 KQSSVG-------DPNYXXXXXXXXXXXPSHVGYLPTFLPRTDQLAGTWVNLXXXXXXXX 111
             S  G        P+Y           PS+VGY+PT LP TD     ++N+        
Sbjct: 209 NPSVGGPSYPPAAGPSYQPSRTPPPPPPPSNVGYMPTILPNTD-----YINM--PSSVAA 261

Query: 110 XXXXXXXPNFXXXXXXXXXXXXAVIFGDDFMSGFEL 3
                  P              AVIFGDDFMSGF++
Sbjct: 262 AGPRGPRPGLAMGVGAGALAAGAVIFGDDFMSGFDI 297


Top