BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039898
         (451 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADF28188.1| 50S ribosomal protein L2 (chloroplast) [Phoenix d...   223   1e-56
ref|YP_740692.1| ribosomal protein L2 [Nandina domestica] gi|114...   219   2e-55
gb|AFG25665.1| ribosomal protein L2, partial [Phormium tenax]         216   1e-54
gb|AFG25663.1| ribosomal protein L2, partial [Nolina atopocarpa]      216   1e-54
gb|AFG25639.1| ribosomal protein L2, partial [Asparagus officina...   216   1e-54

>gb|ADF28188.1| 50S ribosomal protein L2 (chloroplast) [Phoenix dactylifera]
          Length = 277

 Score =  223 bits (568), Expect = 1e-56
 Identities = 105/109 (96%), Positives = 107/109 (98%)
 Frame = -3

Query: 329 ILNNTAIHLYKTSTPSTRNGSVGSQVKSNPRNNLIYGQRRCGKGRNARGIITARHRGGGH 150
           +LNNTAIHLYKTSTPSTRNG+V SQVKSNPRNNLIYGQ RCGKGRNARGIITARHRGGGH
Sbjct: 1   MLNNTAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITARHRGGGH 60

Query: 149 KRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHP 3
           KRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHP
Sbjct: 61  KRLYRKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHP 109


>ref|YP_740692.1| ribosomal protein L2 [Nandina domestica]
           gi|114330034|ref|YP_740715.1| ribosomal protein L2
           [Nandina domestica] gi|122165904|sp|Q09FP6.1|RK2_NANDO
           RecName: Full=50S ribosomal protein L2, chloroplastic
           gi|114054513|gb|ABI49906.1| ribosomal protein L2
           [Nandina domestica] gi|114054536|gb|ABI49929.1|
           ribosomal protein L2 [Nandina domestica]
          Length = 274

 Score =  219 bits (558), Expect = 2e-55
 Identities = 103/104 (99%), Positives = 104/104 (100%)
 Frame = -3

Query: 314 AIHLYKTSTPSTRNGSVGSQVKSNPRNNLIYGQRRCGKGRNARGIITARHRGGGHKRLYR 135
           AIHLYKTSTPSTRNG+VGSQVKSNPRNNLIYGQRRCGKGRNARGIITARHRGGGHKRLYR
Sbjct: 2   AIHLYKTSTPSTRNGTVGSQVKSNPRNNLIYGQRRCGKGRNARGIITARHRGGGHKRLYR 61

Query: 134 KIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHP 3
           KIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHP
Sbjct: 62  KIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHP 105


>gb|AFG25665.1| ribosomal protein L2, partial [Phormium tenax]
          Length = 274

 Score =  216 bits (551), Expect = 1e-54
 Identities = 102/105 (97%), Positives = 103/105 (98%)
 Frame = -3

Query: 317 TAIHLYKTSTPSTRNGSVGSQVKSNPRNNLIYGQRRCGKGRNARGIITARHRGGGHKRLY 138
           TAIHLYKTSTPSTRNG+V SQVKSNPRNNLIYGQ RCGKGRNARGIITARHRGGGHKRLY
Sbjct: 1   TAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITARHRGGGHKRLY 60

Query: 137 RKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHP 3
           RKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHP
Sbjct: 61  RKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHP 105


>gb|AFG25663.1| ribosomal protein L2, partial [Nolina atopocarpa]
          Length = 274

 Score =  216 bits (551), Expect = 1e-54
 Identities = 102/105 (97%), Positives = 103/105 (98%)
 Frame = -3

Query: 317 TAIHLYKTSTPSTRNGSVGSQVKSNPRNNLIYGQRRCGKGRNARGIITARHRGGGHKRLY 138
           TAIHLYKTSTPSTRNG+V SQVKSNPRNNLIYGQ RCGKGRNARGIITARHRGGGHKRLY
Sbjct: 1   TAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITARHRGGGHKRLY 60

Query: 137 RKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHP 3
           RKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHP
Sbjct: 61  RKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHP 105


>gb|AFG25639.1| ribosomal protein L2, partial [Asparagus officinalis]
           gi|381353620|gb|AFG25643.1| ribosomal protein L2,
           partial [Chamaedorea seifrizii]
           gi|381353622|gb|AFG25644.1| ribosomal protein L2,
           partial [Chlorophytum rhizopendulum]
           gi|381353638|gb|AFG25652.1| ribosomal protein L2,
           partial [Hesperaloe parviflora]
           gi|381353640|gb|AFG25653.1| ribosomal protein L2,
           partial [Hosta ventricosa] gi|381353673|gb|AFG25669.1|
           ribosomal protein L2, partial [Ravenea hildebrandtii]
          Length = 274

 Score =  216 bits (551), Expect = 1e-54
 Identities = 102/105 (97%), Positives = 103/105 (98%)
 Frame = -3

Query: 317 TAIHLYKTSTPSTRNGSVGSQVKSNPRNNLIYGQRRCGKGRNARGIITARHRGGGHKRLY 138
           TAIHLYKTSTPSTRNG+V SQVKSNPRNNLIYGQ RCGKGRNARGIITARHRGGGHKRLY
Sbjct: 1   TAIHLYKTSTPSTRNGAVDSQVKSNPRNNLIYGQHRCGKGRNARGIITARHRGGGHKRLY 60

Query: 137 RKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHP 3
           RKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHP
Sbjct: 61  RKIDFRRNEKDISGRIVTIEYDPNRNAYICLIHYGDGEKRYILHP 105