BLASTX nr result

ID: Coptis25_contig00039855 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039855
         (278 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272456.1| PREDICTED: uncharacterized protein At5g39865...   102   4e-20
ref|XP_002518923.1| electron transporter, putative [Ricinus comm...    92   4e-17
ref|NP_001239943.1| uncharacterized protein LOC100780345 [Glycin...    89   5e-16
ref|NP_192801.1| Glutaredoxin family protein [Arabidopsis thalia...    84   1e-14
ref|XP_004143838.1| PREDICTED: uncharacterized protein At5g39865...    80   1e-13

>ref|XP_002272456.1| PREDICTED: uncharacterized protein At5g39865 [Vitis vinifera]
          Length = 320

 Score =  102 bits (253), Expect = 4e-20
 Identities = 51/81 (62%), Positives = 59/81 (72%), Gaps = 8/81 (9%)
 Frame = +3

Query: 3   SRLGHHIVSLTSSTYGLLTIDPPTPP--------RFGLVSLFPSPLPEPKSLRSDPEVIN 158
           S LGHHIVSLTS+TYGLL +DPP  P        RF L S+FPSPL EP+ +RS+PEVIN
Sbjct: 21  STLGHHIVSLTSTTYGLLNLDPPPQPTHPPTLTPRFTLGSVFPSPLSEPRGIRSEPEVIN 80

Query: 159 SWELMADLDCESSRFSPSPFS 221
           SWELMA LD +S RF P P +
Sbjct: 81  SWELMAGLDADSFRFPPLPLA 101


>ref|XP_002518923.1| electron transporter, putative [Ricinus communis]
           gi|223541910|gb|EEF43456.1| electron transporter,
           putative [Ricinus communis]
          Length = 327

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 52/85 (61%), Positives = 57/85 (67%), Gaps = 16/85 (18%)
 Frame = +3

Query: 3   SRLGHHIVSLTSSTYGLLTIDPPT------------PPRFGLVSLFPSPLPEPKSL---- 134
           S L HHIVSLTS+TYGLL +DPPT            P RF L S+FPSPL EPKSL    
Sbjct: 21  SALSHHIVSLTSTTYGLLNLDPPTPQSSATATTPPPPARFTLGSIFPSPLCEPKSLWSEP 80

Query: 135 RSDPEVINSWELMADLDCESSRFSP 209
           RS PE INSWELM+ LD +S RFSP
Sbjct: 81  RSLPETINSWELMSGLDTDSFRFSP 105


>ref|NP_001239943.1| uncharacterized protein LOC100780345 [Glycine max]
           gi|255642823|gb|ACU22113.1| unknown [Glycine max]
          Length = 270

 Score = 88.6 bits (218), Expect = 5e-16
 Identities = 50/76 (65%), Positives = 55/76 (72%), Gaps = 2/76 (2%)
 Frame = +3

Query: 3   SRLGHHIVSLTSSTYGLLTIDPP-TPP-RFGLVSLFPSPLPEPKSLRSDPEVINSWELMA 176
           S LGHHIVSLTS+TYGLLT+DPP TPP RF L SLFP          S+PEVINSWELM+
Sbjct: 22  SALGHHIVSLTSTTYGLLTLDPPSTPPSRFTLGSLFP----------SEPEVINSWELMS 71

Query: 177 DLDCESSRFSPSPFSK 224
            LD +S RFSP P  K
Sbjct: 72  GLDTDSFRFSPLPLPK 87


>ref|NP_192801.1| Glutaredoxin family protein [Arabidopsis thaliana]
           gi|4115916|gb|AAD03427.1| F3H7.9 gene product
           [Arabidopsis thaliana] gi|4539441|emb|CAB40029.1|
           putative protein [Arabidopsis thaliana]
           gi|7267760|emb|CAB78186.1| putative protein [Arabidopsis
           thaliana] gi|332657511|gb|AEE82911.1| Glutaredoxin
           family protein [Arabidopsis thaliana]
          Length = 334

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 42/79 (53%), Positives = 54/79 (68%), Gaps = 8/79 (10%)
 Frame = +3

Query: 3   SRLGHHIVSLTSSTYGLLTIDPPTPP--------RFGLVSLFPSPLPEPKSLRSDPEVIN 158
           S  GHHIV LTS+TYGLLT+DPP PP        +F + +   S   EP+ ++S+PE+IN
Sbjct: 23  SAFGHHIVKLTSTTYGLLTLDPPPPPSPPMTPPEKFTVDTKSKSIWSEPRVIKSEPEIIN 82

Query: 159 SWELMADLDCESSRFSPSP 215
           SWELM+ LD ES RF+P P
Sbjct: 83  SWELMSGLDGESFRFTPLP 101


>ref|XP_004143838.1| PREDICTED: uncharacterized protein At5g39865-like [Cucumis sativus]
           gi|449527262|ref|XP_004170631.1| PREDICTED:
           uncharacterized protein At5g39865-like [Cucumis sativus]
          Length = 314

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 44/69 (63%), Positives = 49/69 (71%), Gaps = 1/69 (1%)
 Frame = +3

Query: 3   SRLGHHIVSLTSSTYGLLTIDPPTPPRFGLVSLFPSPLPEP-KSLRSDPEVINSWELMAD 179
           S L HH VSLTS+TYGLL +DPP+       +  P PLP P KSLRSDPEVINSWELM  
Sbjct: 21  SALTHHFVSLTSTTYGLLNLDPPS-------AAAPPPLPIPAKSLRSDPEVINSWELMDG 73

Query: 180 LDCESSRFS 206
           LD +S RFS
Sbjct: 74  LDADSFRFS 82


Top