BLASTX nr result

ID: Coptis25_contig00039825 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039825
         (385 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276293.2| PREDICTED: uncharacterized protein LOC100266...    92   4e-17
emb|CBI15455.3| unnamed protein product [Vitis vinifera]               92   4e-17
ref|XP_002321475.1| NAC domain protein, IPR003441 [Populus trich...    87   1e-15
ref|XP_003620480.1| NAC domain protein [Medicago truncatula] gi|...    82   5e-14
ref|XP_002532152.1| transcription factor, putative [Ricinus comm...    79   5e-13

>ref|XP_002276293.2| PREDICTED: uncharacterized protein LOC100266459 [Vitis vinifera]
          Length = 539

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 60/144 (41%), Positives = 78/144 (54%), Gaps = 17/144 (11%)
 Frame = -2

Query: 384 EWVVCRVFQKSSAVKKPQETS-----SLESPCHNTTMVNELGEIELPHLNGLTNSSSGFS 220
           EWVVCRVF+KSSAVKKP + +     SLESPC   T+V+E G+IE P++N + NSSSGFS
Sbjct: 153 EWVVCRVFKKSSAVKKPHQPAPSSLPSLESPCDTNTIVSEFGDIEFPNMNSIANSSSGFS 212

Query: 219 AI--------STXXXXXXXXXXXVAMNWASAREAANHPXXXXXXXXXXXXXXXXXXXXLT 64
            I        ST           + MNWA+AREAA+ P                    + 
Sbjct: 213 NINSAQSYNTSTDDNLNMNMNMNMNMNWAAAREAASLP-SLPWSSSLLSPNLQMNSLLIK 271

Query: 63  ALQLRGYQP----TSSDLNFLAQG 4
           ALQL  Y+P    ++ + +FL QG
Sbjct: 272 ALQLGSYRPREATSTENYSFLPQG 295


>emb|CBI15455.3| unnamed protein product [Vitis vinifera]
          Length = 327

 Score = 92.0 bits (227), Expect = 4e-17
 Identities = 60/144 (41%), Positives = 78/144 (54%), Gaps = 17/144 (11%)
 Frame = -2

Query: 384 EWVVCRVFQKSSAVKKPQETS-----SLESPCHNTTMVNELGEIELPHLNGLTNSSSGFS 220
           EWVVCRVF+KSSAVKKP + +     SLESPC   T+V+E G+IE P++N + NSSSGFS
Sbjct: 142 EWVVCRVFKKSSAVKKPHQPAPSSLPSLESPCDTNTIVSEFGDIEFPNMNSIANSSSGFS 201

Query: 219 AI--------STXXXXXXXXXXXVAMNWASAREAANHPXXXXXXXXXXXXXXXXXXXXLT 64
            I        ST           + MNWA+AREAA+ P                    + 
Sbjct: 202 NINSAQSYNTSTDDNLNMNMNMNMNMNWAAAREAASLP-SLPWSSSLLSPNLQMNSLLIK 260

Query: 63  ALQLRGYQP----TSSDLNFLAQG 4
           ALQL  Y+P    ++ + +FL QG
Sbjct: 261 ALQLGSYRPREATSTENYSFLPQG 284


>ref|XP_002321475.1| NAC domain protein, IPR003441 [Populus trichocarpa]
           gi|222868471|gb|EEF05602.1| NAC domain protein,
           IPR003441 [Populus trichocarpa]
          Length = 321

 Score = 87.4 bits (215), Expect = 1e-15
 Identities = 61/138 (44%), Positives = 75/138 (54%), Gaps = 10/138 (7%)
 Frame = -2

Query: 384 EWVVCRVFQKSSAVKKPQE----TSSLESPCHNTTMVN-ELGEIELPHLNGLTNSSSGFS 220
           EWVVCR+FQKS+AVKKPQ+      SL S C   ++VN + G+IELP+LN + NSSSGFS
Sbjct: 144 EWVVCRIFQKSTAVKKPQQEPSSQQSLGSLCDTNSIVNDQYGDIELPNLNRIANSSSGFS 203

Query: 219 AISTXXXXXXXXXXXVA-MNWASAREAANHP-XXXXXXXXXXXXXXXXXXXXLTALQLRG 46
            IS               MNWA+AREAA+                       L ALQLR 
Sbjct: 204 NISAHTYNNESNVNMNLNMNWAAAREAAHTTLPSLSWPPGLLSSNLTTNSLLLKALQLRS 263

Query: 45  YQ---PTSSDLNFLAQGN 1
           YQ    T++D +FL  GN
Sbjct: 264 YQQREATTTDYSFLTNGN 281


>ref|XP_003620480.1| NAC domain protein [Medicago truncatula]
           gi|355495495|gb|AES76698.1| NAC domain protein [Medicago
           truncatula]
          Length = 325

 Score = 82.0 bits (201), Expect = 5e-14
 Identities = 53/120 (44%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
 Frame = -2

Query: 384 EWVVCRVFQKSSAVKKPQETS--SLESPCHNTTMVNELGEIELPHLNGLTNSSS--GFSA 217
           EWVVCRVFQKS A KKPQ+TS    ESPC  T++VNE G++ELP+LNG+TNSSS  GF+ 
Sbjct: 142 EWVVCRVFQKSIATKKPQQTSFSQPESPCDTTSIVNEFGDVELPNLNGITNSSSSCGFTN 201

Query: 216 ISTXXXXXXXXXXXVAMNWASAREAANH-PXXXXXXXXXXXXXXXXXXXXLTALQLRGYQ 40
           I               MN      +++H P                    L ALQLR YQ
Sbjct: 202 IIQGQTFNTHDDLNTNMNLTMNWPSSSHVPSLPWPSNLLNPNNISVNSLLLKALQLRNYQ 261


>ref|XP_002532152.1| transcription factor, putative [Ricinus communis]
           gi|223528162|gb|EEF30226.1| transcription factor,
           putative [Ricinus communis]
          Length = 333

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 61/148 (41%), Positives = 74/148 (50%), Gaps = 21/148 (14%)
 Frame = -2

Query: 384 EWVVCRVFQKSS-AVKKPQETSS----LESPCHNTTMVNELGEIELPHLNGLTN-SSSGF 223
           EWVVCRVFQKSS A KKPQ+ SS    L SPC   ++VNE G+IELP+LN   N SSSGF
Sbjct: 142 EWVVCRVFQKSSSAAKKPQQASSSQQSLGSPCDTNSVVNEFGDIELPNLNSFVNSSSSGF 201

Query: 222 SAISTXXXXXXXXXXXVA------MNWASARE---AANHPXXXXXXXXXXXXXXXXXXXX 70
           + +S                    +NWA+ RE   AA                       
Sbjct: 202 NNMSAQSYNNENNVNMNMINTNLNVNWAATREAVVAAATLPSLSWPSSLLTSDLTMNSLI 261

Query: 69  LTALQLRGYQ------PTSSDLNFLAQG 4
           L ALQLR YQ       +++D +FLAQG
Sbjct: 262 LKALQLRSYQQREAAAASNNDYSFLAQG 289


Top