BLASTX nr result
ID: Coptis25_contig00039796
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00039796
(319 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containi... 157 9e-37
ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containi... 156 2e-36
emb|CBI23556.3| unnamed protein product [Vitis vinifera] 156 2e-36
ref|XP_002321443.1| predicted protein [Populus trichocarpa] gi|2... 154 6e-36
ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containi... 138 4e-31
>ref|XP_003634143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Vitis vinifera]
Length = 631
Score = 157 bits (397), Expect = 9e-37
Identities = 67/106 (63%), Positives = 90/106 (84%)
Frame = +1
Query: 1 FYDMLESGHYPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFT 180
F DMLE G YPNE+CF AVIRAC + ++AW+G +++G V+K+GY E+++CVGCELI++F
Sbjct: 165 FLDMLELGFYPNEYCFAAVIRACSNANHAWVGEIIYGFVVKTGYLEADVCVGCELIDMFV 224
Query: 181 KGMGDLDSARKVFDRMPERNAVSWTLMITRYAQCGLAKEAVDLFIE 318
KG GDL SA KVFD+MPERN V+WTLMITR+AQ G A++A+DLF++
Sbjct: 225 KGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLD 270
Score = 85.5 bits (210), Expect = 4e-15
Identities = 43/107 (40%), Positives = 68/107 (63%), Gaps = 3/107 (2%)
Frame = +1
Query: 1 FYDMLESGHYPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFT 180
F DM SG+ P+ F +++V+ AC + +G+ + V++ G ++CVGC L++++
Sbjct: 268 FLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLG-LALDVCVGCSLVDMYA 326
Query: 181 K--GMGDLDSARKVFDRMPERNAVSWTLMITRYAQCG-LAKEAVDLF 312
K G +D +RKVF+RMPE N +SWT +IT Y Q G KEA++LF
Sbjct: 327 KCAADGSVDDSRKVFERMPEHNVMSWTAIITAYVQSGECDKEAIELF 373
Score = 63.5 bits (153), Expect = 2e-08
Identities = 37/101 (36%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Frame = +1
Query: 19 SGH-YPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFTKGMGD 195
SGH +PN F F++V++AC + + + G V+ +K G N CVG LI ++ + G
Sbjct: 378 SGHIWPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVN-CVGNSLISMYARS-GR 435
Query: 196 LDSARKVFDRMPERNAVSWTLMITRYAQCGLAKEAVDLFIE 318
++ ARK FD + E+N VS+ ++ YA+ ++EA LF E
Sbjct: 436 MEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 476
>ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like, partial [Vitis vinifera]
Length = 809
Score = 156 bits (394), Expect = 2e-36
Identities = 67/106 (63%), Positives = 89/106 (83%)
Frame = +1
Query: 1 FYDMLESGHYPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFT 180
F DMLE G YPNE+CF AVIRAC + + AW+G +++G V+K+GY E+++CVGCELI++F
Sbjct: 116 FLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFV 175
Query: 181 KGMGDLDSARKVFDRMPERNAVSWTLMITRYAQCGLAKEAVDLFIE 318
KG GDL SA KVFD+MPERN V+WTLMITR+AQ G A++A+DLF++
Sbjct: 176 KGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLD 221
Score = 84.0 bits (206), Expect = 1e-14
Identities = 42/107 (39%), Positives = 68/107 (63%), Gaps = 3/107 (2%)
Frame = +1
Query: 1 FYDMLESGHYPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFT 180
F DM SG+ P+ F +++V+ AC + +G+ + V++ G ++CVGC L++++
Sbjct: 219 FLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLG-LALDVCVGCSLVDMYA 277
Query: 181 K--GMGDLDSARKVFDRMPERNAVSWTLMITRYAQCG-LAKEAVDLF 312
K G +D +RKVF++MPE N +SWT +IT Y Q G KEA++LF
Sbjct: 278 KCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELF 324
Score = 63.2 bits (152), Expect = 2e-08
Identities = 33/104 (31%), Positives = 62/104 (59%)
Frame = +1
Query: 1 FYDMLESGHYPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFT 180
F ++ ++G + F F +++ G + G +LK GY +SN C+ LI +++
Sbjct: 425 FNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGY-KSNQCICNALISMYS 483
Query: 181 KGMGDLDSARKVFDRMPERNAVSWTLMITRYAQCGLAKEAVDLF 312
+ G++++A +VF+ M +RN +SWT MIT +A+ G A A+++F
Sbjct: 484 R-CGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMF 526
Score = 62.4 bits (150), Expect = 4e-08
Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Frame = +1
Query: 19 SGHY-PNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFTKGMGD 195
SGH PN F F++V++AC + + + G V+ +K G N CVG LI ++ + G
Sbjct: 329 SGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVN-CVGNSLISMYARS-GR 386
Query: 196 LDSARKVFDRMPERNAVSWTLMITRYAQCGLAKEAVDLFIE 318
++ ARK FD + E+N VS+ ++ YA+ ++EA LF E
Sbjct: 387 MEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 427
>emb|CBI23556.3| unnamed protein product [Vitis vinifera]
Length = 827
Score = 156 bits (394), Expect = 2e-36
Identities = 67/106 (63%), Positives = 89/106 (83%)
Frame = +1
Query: 1 FYDMLESGHYPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFT 180
F DMLE G YPNE+CF AVIRAC + + AW+G +++G V+K+GY E+++CVGCELI++F
Sbjct: 134 FLDMLELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFV 193
Query: 181 KGMGDLDSARKVFDRMPERNAVSWTLMITRYAQCGLAKEAVDLFIE 318
KG GDL SA KVFD+MPERN V+WTLMITR+AQ G A++A+DLF++
Sbjct: 194 KGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLD 239
Score = 84.0 bits (206), Expect = 1e-14
Identities = 42/107 (39%), Positives = 68/107 (63%), Gaps = 3/107 (2%)
Frame = +1
Query: 1 FYDMLESGHYPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFT 180
F DM SG+ P+ F +++V+ AC + +G+ + V++ G ++CVGC L++++
Sbjct: 237 FLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLG-LALDVCVGCSLVDMYA 295
Query: 181 K--GMGDLDSARKVFDRMPERNAVSWTLMITRYAQCG-LAKEAVDLF 312
K G +D +RKVF++MPE N +SWT +IT Y Q G KEA++LF
Sbjct: 296 KCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIELF 342
Score = 63.2 bits (152), Expect = 2e-08
Identities = 33/104 (31%), Positives = 62/104 (59%)
Frame = +1
Query: 1 FYDMLESGHYPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFT 180
F ++ ++G + F F +++ G + G +LK GY +SN C+ LI +++
Sbjct: 443 FNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGY-KSNQCICNALISMYS 501
Query: 181 KGMGDLDSARKVFDRMPERNAVSWTLMITRYAQCGLAKEAVDLF 312
+ G++++A +VF+ M +RN +SWT MIT +A+ G A A+++F
Sbjct: 502 R-CGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMF 544
Score = 62.4 bits (150), Expect = 4e-08
Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Frame = +1
Query: 19 SGHY-PNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFTKGMGD 195
SGH PN F F++V++AC + + + G V+ +K G N CVG LI ++ + G
Sbjct: 347 SGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVN-CVGNSLISMYARS-GR 404
Query: 196 LDSARKVFDRMPERNAVSWTLMITRYAQCGLAKEAVDLFIE 318
++ ARK FD + E+N VS+ ++ YA+ ++EA LF E
Sbjct: 405 MEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNE 445
>ref|XP_002321443.1| predicted protein [Populus trichocarpa] gi|222868439|gb|EEF05570.1|
predicted protein [Populus trichocarpa]
Length = 723
Score = 154 bits (390), Expect = 6e-36
Identities = 66/106 (62%), Positives = 89/106 (83%)
Frame = +1
Query: 1 FYDMLESGHYPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFT 180
F+DMLE G YPNE+CFT V RAC + +N +G+++FG +LK+GYFES++CVGC LI++F
Sbjct: 30 FFDMLECGFYPNEYCFTGVFRACSNKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFV 89
Query: 181 KGMGDLDSARKVFDRMPERNAVSWTLMITRYAQCGLAKEAVDLFIE 318
KG GDL+SA KVFDRMP+RN V+WTLMITR+ Q G +++AVDLF++
Sbjct: 90 KGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLD 135
Score = 90.9 bits (224), Expect = 1e-16
Identities = 47/109 (43%), Positives = 70/109 (64%), Gaps = 3/109 (2%)
Frame = +1
Query: 1 FYDMLESGHYPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFT 180
F DM+ SG+ P+ F + V+ AC + +GR V+KSG + ++CVGC L++++
Sbjct: 133 FLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSG-LDLDVCVGCSLVDMYA 191
Query: 181 KGMGD--LDSARKVFDRMPERNAVSWTLMITRYAQC-GLAKEAVDLFIE 318
K + D +D ARKVFDRMP N +SWT +IT Y Q G +EA++LF+E
Sbjct: 192 KCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLE 240
Score = 72.4 bits (176), Expect = 4e-11
Identities = 37/106 (34%), Positives = 66/106 (62%)
Frame = +1
Query: 1 FYDMLESGHYPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFT 180
F +M++ PN F F++V++AC + + W+G V+ V+K N CVG LI +++
Sbjct: 238 FLEMVQGQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRLASIN-CVGNSLISMYS 296
Query: 181 KGMGDLDSARKVFDRMPERNAVSWTLMITRYAQCGLAKEAVDLFIE 318
+ G++++ARK FD + E+N VS+ ++ YA+ ++EA +LF E
Sbjct: 297 R-CGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNE 341
Score = 56.6 bits (135), Expect = 2e-06
Identities = 33/104 (31%), Positives = 59/104 (56%)
Frame = +1
Query: 1 FYDMLESGHYPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFT 180
F ++ +G N F F +++ G + +LKSG F+SNL + LI +++
Sbjct: 339 FNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSG-FKSNLHICNALISMYS 397
Query: 181 KGMGDLDSARKVFDRMPERNAVSWTLMITRYAQCGLAKEAVDLF 312
+ G++++A +VF+ M + N +SWT MIT +A+ G A A++ F
Sbjct: 398 R-CGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETF 440
>ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
chloroplastic-like [Cucumis sativus]
Length = 849
Score = 138 bits (348), Expect = 4e-31
Identities = 63/106 (59%), Positives = 82/106 (77%)
Frame = +1
Query: 1 FYDMLESGHYPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFT 180
F DM+E+G+YPNE+CF A RAC + +G +FG V+K+GY +S++CVGC LI++F
Sbjct: 156 FVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFV 215
Query: 181 KGMGDLDSARKVFDRMPERNAVSWTLMITRYAQCGLAKEAVDLFIE 318
KG GDL SA KVF++MPERNAV+WTLMITR Q G A EA+DLF+E
Sbjct: 216 KGRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLE 261
Score = 71.6 bits (174), Expect = 6e-11
Identities = 40/107 (37%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Frame = +1
Query: 1 FYDMLESGHYPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFT 180
F +M+ SG+ P+ F + VI AC + + +G+ + ++ G + CVGC LI ++
Sbjct: 259 FLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHG-LTLDRCVGCCLINMYA 317
Query: 181 KGM--GDLDSARKVFDRMPERNAVSWTLMITRYAQ-CGLAKEAVDLF 312
K G + +ARK+FD++ + N SWT MIT Y Q G +EA+DLF
Sbjct: 318 KCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEALDLF 364
Score = 62.8 bits (151), Expect = 3e-08
Identities = 37/106 (34%), Positives = 60/106 (56%)
Frame = +1
Query: 1 FYDMLESGHYPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFT 180
F M+ + PN F F++ ++AC + IG VF +K G+ N CV LI ++
Sbjct: 364 FRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVN-CVANSLISMYA 422
Query: 181 KGMGDLDSARKVFDRMPERNAVSWTLMITRYAQCGLAKEAVDLFIE 318
+ G +D ARK FD + E+N +S+ +I YA+ ++EA++LF E
Sbjct: 423 RS-GRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNE 467
Score = 55.8 bits (133), Expect = 4e-06
Identities = 32/104 (30%), Positives = 59/104 (56%)
Frame = +1
Query: 1 FYDMLESGHYPNEFCFTAVIRACRDYDNAWIGRVVFGSVLKSGYFESNLCVGCELIELFT 180
F ++ + G + F F +++ G + V+KSG + N V LI +++
Sbjct: 465 FNEIEDQGMGASAFTFASLLSGAASIGTIGKGEQIHARVIKSG-LKLNQSVCNALISMYS 523
Query: 181 KGMGDLDSARKVFDRMPERNAVSWTLMITRYAQCGLAKEAVDLF 312
+ G+++SA +VF+ M +RN +SWT +IT +A+ G A +A++LF
Sbjct: 524 R-CGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELF 566