BLASTX nr result

ID: Coptis25_contig00039773 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039773
         (384 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631173.1| PREDICTED: LOW QUALITY PROTEIN: glucan endo-...    79   5e-13
emb|CBI26850.3| unnamed protein product [Vitis vinifera]               79   5e-13
ref|XP_002312452.1| predicted protein [Populus trichocarpa] gi|2...    70   2e-10
ref|XP_002314794.1| predicted protein [Populus trichocarpa] gi|2...    69   5e-10
gb|AAK85402.2| beta-1,3-glucanase [Camellia sinensis]                  68   7e-10

>ref|XP_003631173.1| PREDICTED: LOW QUALITY PROTEIN: glucan endo-1,3-beta-glucosidase
           3-like [Vitis vinifera]
          Length = 538

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
 Frame = +3

Query: 6   ISTTDPSHSSCLFPGSGGRNGTFLNSTTLAPSSNSTASGSIPLLYRVN--VRSFLVIGGL 179
           I+TTDPSH SC FPGS GRN TF+N T+LAPSSNST+SGS    +  +  + S ++IG L
Sbjct: 472 ITTTDPSHGSCKFPGSAGRNNTFINGTSLAPSSNSTSSGSQSQYFYSSGALMSCMIIGIL 531

Query: 180 FWSAVFL 200
            WSAV L
Sbjct: 532 VWSAVLL 538


>emb|CBI26850.3| unnamed protein product [Vitis vinifera]
          Length = 498

 Score = 78.6 bits (192), Expect = 5e-13
 Identities = 40/67 (59%), Positives = 49/67 (73%), Gaps = 2/67 (2%)
 Frame = +3

Query: 6   ISTTDPSHSSCLFPGSGGRNGTFLNSTTLAPSSNSTASGSIPLLYRVN--VRSFLVIGGL 179
           I+TTDPSH SC FPGS GRN TF+N T+LAPSSNST+SGS    +  +  + S ++IG L
Sbjct: 432 ITTTDPSHGSCKFPGSAGRNNTFINGTSLAPSSNSTSSGSQSQYFYSSGALMSCMIIGIL 491

Query: 180 FWSAVFL 200
            WSAV L
Sbjct: 492 VWSAVLL 498


>ref|XP_002312452.1| predicted protein [Populus trichocarpa] gi|222852272|gb|EEE89819.1|
           predicted protein [Populus trichocarpa]
          Length = 479

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
 Frame = +3

Query: 6   ISTTDPSHSSCLFPGSGGRNGTFLNSTTLAPSSNSTASG--SIPLLYRVNVRSFLVIGGL 179
           I+TTDPSH SC+FPGS GRNG+  N+T+LAPSSNST SG  S+ +    +  + ++IG L
Sbjct: 413 ITTTDPSHGSCIFPGSAGRNGSLPNTTSLAPSSNSTTSGCHSVYIYGAGSFTTSVIIGVL 472

Query: 180 FWSAVFL 200
             S  FL
Sbjct: 473 LMSVFFL 479


>ref|XP_002314794.1| predicted protein [Populus trichocarpa] gi|222863834|gb|EEF00965.1|
           predicted protein [Populus trichocarpa]
          Length = 493

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 36/67 (53%), Positives = 47/67 (70%), Gaps = 2/67 (2%)
 Frame = +3

Query: 6   ISTTDPSHSSCLFPGSGGRNGTFLNSTTLAPSSNSTASG--SIPLLYRVNVRSFLVIGGL 179
           I+T+DPSH SC+FPGS GRNGTF N+T+LAPSSNS+ SG  S+      +  + ++IG L
Sbjct: 427 ITTSDPSHGSCIFPGSAGRNGTFPNTTSLAPSSNSSTSGCHSVYFYGAGSFTTSVIIGVL 486

Query: 180 FWSAVFL 200
             S V L
Sbjct: 487 LMSMVCL 493


>gb|AAK85402.2| beta-1,3-glucanase [Camellia sinensis]
          Length = 495

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 37/68 (54%), Positives = 47/68 (69%), Gaps = 3/68 (4%)
 Frame = +3

Query: 6   ISTTDPSHSSCLFPGSGGRNGTFLNSTTLAPSSNSTASGSIPLLY---RVNVRSFLVIGG 176
           I+TT+P+H SC+FPGS G+NGTFLNST  APS NST+SG  P  Y     +  + + +G 
Sbjct: 431 ITTTNPTHGSCVFPGSNGKNGTFLNST--APSLNSTSSG-CPARYMRGSASASAIVAVGI 487

Query: 177 LFWSAVFL 200
           L WS VFL
Sbjct: 488 LSWSLVFL 495


Top