BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039772
         (325 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]    69   3e-16
ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containi...    69   3e-16
ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containi...    59   1e-12
ref|NP_201359.1| pentatricopeptide repeat-containing protein [Ar...    52   2e-08
ref|XP_002326371.1| predicted protein [Populus trichocarpa] gi|2...    49   2e-08

>emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score = 69.3 bits (168), Expect(2) = 3e-16
 Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 12/69 (17%)
 Frame = -3

Query: 320 PNWQKNQSLQKL----TPFHVSQLFNLNIDPKIALTFFN--------RHDVKSYLSLLNL 177
           PNWQK+ SL+KL    TP HVS LF  N+DP+ AL+FFN        +H+V SY S+LN+
Sbjct: 51  PNWQKHPSLRKLLPSLTPSHVSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNI 110

Query: 176 LIRARFLYV 150
           LIRAR L V
Sbjct: 111 LIRARLLGV 119



 Score = 40.4 bits (93), Expect(2) = 3e-16
 Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
 Frame = -1

Query: 127 SVEDCNYVLTELRKLTSR-ECGFKFTLKCYNYLLMSLARVLLI 2
           S+ED  +VL   RK+ +  E  FK TL+CYN +LMSL++ LLI
Sbjct: 133 SIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLI 175


>ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera] gi|296084392|emb|CBI24780.3| unnamed
           protein product [Vitis vinifera]
          Length = 890

 Score = 69.3 bits (168), Expect(2) = 3e-16
 Identities = 38/69 (55%), Positives = 47/69 (68%), Gaps = 12/69 (17%)
 Frame = -3

Query: 320 PNWQKNQSLQKL----TPFHVSQLFNLNIDPKIALTFFN--------RHDVKSYLSLLNL 177
           PNWQK+ SL+KL    TP HVS LF  N+DP+ AL+FFN        +H+V SY S+LN+
Sbjct: 51  PNWQKHPSLRKLLPSLTPSHVSSLFAFNLDPQTALSFFNWIALRPGFKHNVHSYSSMLNI 110

Query: 176 LIRARFLYV 150
           LIRAR L V
Sbjct: 111 LIRARLLGV 119



 Score = 40.4 bits (93), Expect(2) = 3e-16
 Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 1/43 (2%)
 Frame = -1

Query: 127 SVEDCNYVLTELRKLTSR-ECGFKFTLKCYNYLLMSLARVLLI 2
           S+ED  +VL   RK+ +  E  FK TL+CYN +LMSL++ LLI
Sbjct: 133 SIEDVLFVLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLI 175


>ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
           gi|449522905|ref|XP_004168466.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score = 58.9 bits (141), Expect(2) = 1e-12
 Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 12/69 (17%)
 Frame = -3

Query: 320 PNWQKNQSLQKL----TPFHVSQLFNLNIDPKIALTFFN--------RHDVKSYLSLLNL 177
           PNWQK+ SL+ L     P H+S LF LN+DP+ AL FFN        +H+V+S++S+LN+
Sbjct: 60  PNWQKHPSLKNLIPSIAPSHISALFALNLDPQTALAFFNWIGQKHGFKHNVQSHVSMLNI 119

Query: 176 LIRARFLYV 150
           L+   +L +
Sbjct: 120 LVPNGYLRI 128



 Score = 38.9 bits (89), Expect(2) = 1e-12
 Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = -1

Query: 127 SVEDCNYVLTELRKLTSRECGFKF--TLKCYNYLLMSLARVLLI 2
           S E+  +VL  LR +  R   FKF  TL+CYN LLM L+R L+I
Sbjct: 142 SSENALFVLEMLRSMNRRVDAFKFKLTLRCYNMLLMLLSRFLMI 185


>ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g65560 gi|8978284|dbj|BAA98175.1| unnamed protein
           product [Arabidopsis thaliana]
           gi|110737310|dbj|BAF00601.1| hypothetical protein
           [Arabidopsis thaliana] gi|332010688|gb|AED98071.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 915

 Score = 52.0 bits (123), Expect(2) = 2e-08
 Identities = 30/69 (43%), Positives = 41/69 (59%), Gaps = 12/69 (17%)
 Frame = -3

Query: 320 PNWQKNQSLQKL----TPFHVSQLFNLNIDPKIALTFFN--------RHDVKSYLSLLNL 177
           PNW K+ SL+ +    +P HVS LF+L++DPK AL F +        +H V SY SLL L
Sbjct: 73  PNWHKSPSLKSMVSAISPSHVSSLFSLDLDPKTALNFSHWISQNPRYKHSVYSYASLLTL 132

Query: 176 LIRARFLYV 150
           LI   ++ V
Sbjct: 133 LINNGYVGV 141



 Score = 31.2 bits (69), Expect(2) = 2e-08
 Identities = 20/45 (44%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
 Frame = -1

Query: 127 SVEDCNYVLTELRKLTSRE---CGFKFTLKCYNYLLMSLARVLLI 2
           SV D  YVL   RK+   E     +K  + CYN LL SLAR  L+
Sbjct: 155 SVGDALYVLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLV 199


>ref|XP_002326371.1| predicted protein [Populus trichocarpa] gi|222833564|gb|EEE72041.1|
           predicted protein [Populus trichocarpa]
          Length = 726

 Score = 49.3 bits (116), Expect(2) = 2e-08
 Identities = 30/66 (45%), Positives = 39/66 (59%), Gaps = 15/66 (22%)
 Frame = -3

Query: 323 HPNWQKNQSLQK----LTPFHVSQLFN--LNIDPKIALTFFN---------RHDVKSYLS 189
           HP WQ++ S QK    L+P HVS LFN   +++P IAL FFN         +H VKS+  
Sbjct: 66  HPKWQRHPSFQKLIPNLSPSHVSSLFNNHPDLNPNIALQFFNSLPLIKPGFKHTVKSHSF 125

Query: 188 LLNLLI 171
           LL +LI
Sbjct: 126 LLKILI 131



 Score = 33.9 bits (76), Expect(2) = 2e-08
 Identities = 18/44 (40%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
 Frame = -1

Query: 127 SVEDCNYVLTELRKLT--SRECGFKFTLKCYNYLLMSLARVLLI 2
           SV+D  ++L  LR++     +  FK +++ YN LLM LAR L+I
Sbjct: 152 SVDDIRFLLDFLRQMNRDDNDIKFKLSVRSYNELLMMLARFLMI 195