BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039758
         (335 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containi...   144   1e-32
ref|XP_002313097.1| predicted protein [Populus trichocarpa] gi|2...   135   3e-30
ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   122   3e-26
ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containi...   122   3e-26
ref|NP_198787.1| pentatricopeptide repeat-containing protein [Ar...   121   5e-26

>ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  144 bits (362), Expect = 1e-32
 Identities = 74/113 (65%), Positives = 89/113 (78%), Gaps = 2/113 (1%)
 Frame = +2

Query: 2   TLTLKFLNWATPHSFFTSHPKCISLHILTNFKLYKSAQSLAQTLISTHDDDM--SIFNCL 175
           TLTLKFL WA  H FF SH KC+SLHILT FKLYK+AQ+LAQ L  +  D    SIF CL
Sbjct: 72  TLTLKFLTWARNHPFFDSHCKCLSLHILTRFKLYKTAQTLAQELALSASDPSGSSIFQCL 131

Query: 176 KLTYHECNSSSAVFDLLIKSYANLGMIKKGLDTIDLAKNSGFGPGVLSYNSLL 334
           K +YH  NSSSAVFDL++KSY++L MI + ++TI+LAK+SGF PGVLSYNS+L
Sbjct: 132 KDSYHVYNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVL 184


>ref|XP_002313097.1| predicted protein [Populus trichocarpa] gi|222849505|gb|EEE87052.1|
           predicted protein [Populus trichocarpa]
          Length = 751

 Score =  135 bits (341), Expect = 3e-30
 Identities = 69/113 (61%), Positives = 84/113 (74%), Gaps = 2/113 (1%)
 Frame = +2

Query: 2   TLTLKFLNWATPHSFFTSHPKCISLHILTNFKLYKSAQSLAQTLISTHDDDMS--IFNCL 175
           TLTLKF+N+A PH FF  H KCI+LHILT FKLYK+AQ+LAQ L     D+     F CL
Sbjct: 62  TLTLKFINFAKPHQFFNPHCKCIALHILTKFKLYKTAQNLAQDLAENSVDEKGNYFFQCL 121

Query: 176 KLTYHECNSSSAVFDLLIKSYANLGMIKKGLDTIDLAKNSGFGPGVLSYNSLL 334
           K TY  CNSSSAVFDL++KS + L  I+K L+ +DLAK +GF PGVLSYN++L
Sbjct: 122 KDTYFMCNSSSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAIL 174


>ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  122 bits (306), Expect = 3e-26
 Identities = 59/113 (52%), Positives = 83/113 (73%), Gaps = 2/113 (1%)
 Frame = +2

Query: 2   TLTLKFLNWATPHSFFTSHPKCISLHILTNFKLYKSAQSLAQTLISTHDDDMS--IFNCL 175
           +L LKFL+WA    FF+   KC++LHILT +KLYK+AQSLA+ ++    D+    +F CL
Sbjct: 62  SLVLKFLDWARSQQFFSFQCKCLALHILTRYKLYKTAQSLAEEVVVNTVDETGEDLFQCL 121

Query: 176 KLTYHECNSSSAVFDLLIKSYANLGMIKKGLDTIDLAKNSGFGPGVLSYNSLL 334
           K +Y++C SSSAVFDL++KS A + +I K L  ++LAK+ GF PGVLSYN++L
Sbjct: 122 KNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAIL 174


>ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  122 bits (306), Expect = 3e-26
 Identities = 59/113 (52%), Positives = 83/113 (73%), Gaps = 2/113 (1%)
 Frame = +2

Query: 2   TLTLKFLNWATPHSFFTSHPKCISLHILTNFKLYKSAQSLAQTLISTHDDDMS--IFNCL 175
           +L LKFL+WA    FF+   KC++LHILT +KLYK+AQSLA+ ++    D+    +F CL
Sbjct: 62  SLVLKFLDWARSQQFFSFQCKCLALHILTRYKLYKTAQSLAEEVVVNTVDETGEDLFQCL 121

Query: 176 KLTYHECNSSSAVFDLLIKSYANLGMIKKGLDTIDLAKNSGFGPGVLSYNSLL 334
           K +Y++C SSSAVFDL++KS A + +I K L  ++LAK+ GF PGVLSYN++L
Sbjct: 122 KNSYYQCKSSSAVFDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAIL 174


>ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
           gi|10177971|dbj|BAB11377.1| unnamed protein product
           [Arabidopsis thaliana] gi|332007083|gb|AED94466.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 747

 Score =  121 bits (304), Expect = 5e-26
 Identities = 63/113 (55%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
 Frame = +2

Query: 5   LTLKFLNWATPHSFFTSHPKCISLHILTNFKLYKSAQSLAQTLIS-THDDDMS--IFNCL 175
           L LKFLNWA PH FFT   KCI+LHILT FKLYK+AQ LA+ + + T DD+ +  +F  L
Sbjct: 64  LILKFLNWANPHQFFTLRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFKSL 123

Query: 176 KLTYHECNSSSAVFDLLIKSYANLGMIKKGLDTIDLAKNSGFGPGVLSYNSLL 334
           + TY  C S+S+VFDL++KSY+ L +I K L  + LA+  GF PGVLSYN++L
Sbjct: 124 QETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVL 176