BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039707
         (311 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC63844.1| putative non-LTR retroelement reverse transcripta...    55   4e-06
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    47   8e-06

>gb|AAC63844.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1231

 Score = 55.5 bits (132), Expect = 4e-06
 Identities = 27/52 (51%), Positives = 37/52 (71%)
 Frame = +1

Query: 154 GPWLLFGDFNAIISPDEKIGGNSVMNKCMLDFNDFVNDIGLFIDLGFKGPKF 309
           GP L+ GDFN I+  DE++GGN  ++   L F D++N++ L IDLGFKG KF
Sbjct: 31  GPLLIGGDFNTILWVDERMGGNGRLSPDSLAFGDWINELSL-IDLGFKGNKF 81


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 47.4 bits (111), Expect(2) = 8e-06
 Identities = 19/42 (45%), Positives = 26/42 (61%)
 Frame = +1

Query: 154 GPWLLFGDFNAIISPDEKIGGNSVMNKCMLDFNDFVNDIGLF 279
           GPW+L GDFN ++ P EKIGG +      L+F   +N  GL+
Sbjct: 129 GPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLW 170



 Score = 26.9 bits (58), Expect(2) = 8e-06
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +2

Query: 50  DWYFTFVYGDPVMHRRKIVWDEIRTL 127
           ++Y T +YG+PV   R  +W+ +  L
Sbjct: 98  EFYLTCIYGEPVQAERGELWERLTRL 123