BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039635
         (518 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAB08277.1| unnamed protein product [Arabidopsis thaliana]        134   8e-30
ref|XP_002302415.1| predicted protein [Populus trichocarpa] gi|2...   134   1e-29
ref|XP_002510115.1| transcription initiation factor, putative [R...   133   1e-29
ref|XP_002520510.1| transcription initiation factor, putative [R...   133   1e-29
ref|NP_001190458.1| TBP-associated factor 4 [Arabidopsis thalian...   132   2e-29

>dbj|BAB08277.1| unnamed protein product [Arabidopsis thaliana]
          Length = 689

 Score =  134 bits (337), Expect = 8e-30
 Identities = 74/148 (50%), Positives = 107/148 (72%), Gaps = 3/148 (2%)
 Frame = -1

Query: 506 EDSNNITALGGASIREEDEQLLLGHMEESRISQEAQTVV-EEEERLILQRIPLQRKLAEI 330
           E  N++TA+ G ++REE+EQL  G  E+ R+S+ ++ VV EEEERLILQ+ PLQRKLAEI
Sbjct: 424 EQLNDVTAVSGVNLREEEEQLFSGAKEDGRVSEASRRVVHEEEERLILQKNPLQRKLAEI 483

Query: 329 ISKYGITHISNNVEQCLSMCVKERVLGMISDLTKLSKLRVDRGKAVQQTSMTSDAQLETL 150
           ++K G+  ISN+VE+CLS+CV+ER+ G++S + +LSK RVD  K+  +T +TSD +L+  
Sbjct: 484 MAKAGLKQISNDVERCLSLCVEERMRGLLSHIIRLSKQRVDAEKSRHRTFITSDIRLQIN 543

Query: 149 MMDCKAKELSEKCQDEDDVI--PQKHNK 72
            M+ K KE  EK Q E + +  P + NK
Sbjct: 544 EMNQKVKEEWEKKQAEAEKLKKPSEGNK 571


>ref|XP_002302415.1| predicted protein [Populus trichocarpa] gi|222844141|gb|EEE81688.1|
           predicted protein [Populus trichocarpa]
          Length = 379

 Score =  134 bits (336), Expect = 1e-29
 Identities = 74/145 (51%), Positives = 106/145 (73%), Gaps = 1/145 (0%)
 Frame = -1

Query: 506 EDSNNITALGGASIREEDEQLLLGHMEESRISQEAQTVV-EEEERLILQRIPLQRKLAEI 330
           E  N++TA+ G ++REE+EQL  G  E+SR+S+ ++ VV EEEERLILQ+ PLQ+KL EI
Sbjct: 69  EQLNDVTAVSGVNLREEEEQLFSGTKEDSRVSEASRRVVQEEEERLILQKKPLQKKLGEI 128

Query: 329 ISKYGITHISNNVEQCLSMCVKERVLGMISDLTKLSKLRVDRGKAVQQTSMTSDAQLETL 150
           ++K G+ +I N+V +CLS+CV+ER+ G+ISDL +LSK RVD  K   QT +TSD + + +
Sbjct: 129 MAKCGLKNIGNDVGRCLSLCVEERMRGLISDLIRLSKQRVDAEKPRHQTLITSDVRQQIM 188

Query: 149 MMDCKAKELSEKCQDEDDVIPQKHN 75
            M+ KA+E  EK Q E + + QK N
Sbjct: 189 TMNRKAREEWEKRQAEAEKL-QKVN 212


>ref|XP_002510115.1| transcription initiation factor, putative [Ricinus communis]
            gi|223550816|gb|EEF52302.1| transcription initiation
            factor, putative [Ricinus communis]
          Length = 925

 Score =  133 bits (335), Expect = 1e-29
 Identities = 70/136 (51%), Positives = 103/136 (75%), Gaps = 1/136 (0%)
 Frame = -1

Query: 506  EDSNNITALGGASIREEDEQLLLGHMEESRISQEAQTVV-EEEERLILQRIPLQRKLAEI 330
            E  N++TA+ G ++REE+EQL  G  E+SR+S+ ++ VV EEEERLILQ+ PLQ+KLAEI
Sbjct: 613  EQLNDVTAVSGVNLREEEEQLFSGSKEDSRVSEASRRVVQEEEERLILQKTPLQKKLAEI 672

Query: 329  ISKYGITHISNNVEQCLSMCVKERVLGMISDLTKLSKLRVDRGKAVQQTSMTSDAQLETL 150
            + K G+ +I+N+VE+CLS+CV+ER+ G+IS L +LSK RVD  K+  +T +TSD + + +
Sbjct: 673  MVKCGLKNINNDVERCLSLCVEERMRGLISTLIRLSKQRVDAEKSRHRTVITSDVRQQIM 732

Query: 149  MMDCKAKELSEKCQDE 102
             M+ KA+E  E+ Q E
Sbjct: 733  TMNQKAREEWERKQAE 748


>ref|XP_002520510.1| transcription initiation factor, putative [Ricinus communis]
            gi|223540352|gb|EEF41923.1| transcription initiation
            factor, putative [Ricinus communis]
          Length = 927

 Score =  133 bits (335), Expect = 1e-29
 Identities = 69/148 (46%), Positives = 111/148 (75%), Gaps = 1/148 (0%)
 Frame = -1

Query: 506  EDSNNITALGGASIREEDEQLLLGHMEESRISQEAQTVV-EEEERLILQRIPLQRKLAEI 330
            E  N++TA+ G ++REE+EQL  G  E+SR+S+ ++ VV EEEERLILQ+ PLQ+K+AEI
Sbjct: 580  EQLNDVTAVSGVNLREEEEQLFSGSKEDSRVSEASRRVVQEEEERLILQKTPLQKKVAEI 639

Query: 329  ISKYGITHISNNVEQCLSMCVKERVLGMISDLTKLSKLRVDRGKAVQQTSMTSDAQLETL 150
            ++K G+ +I+++VE+CLS+CV+ER+ G++S L +LSK R+D  K   +T ++SD + + +
Sbjct: 640  MAKCGLKYINSDVERCLSLCVEERMRGLVSTLIRLSKQRIDAEKPKHRTVISSDVRQQIM 699

Query: 149  MMDCKAKELSEKCQDEDDVIPQKHNKTK 66
             M+ KAKE  +K Q E +++ QK N+ +
Sbjct: 700  TMNRKAKEEWDKKQAESEML-QKVNEVE 726


>ref|NP_001190458.1| TBP-associated factor 4 [Arabidopsis thaliana]
           gi|332007531|gb|AED94914.1| TBP-associated factor 4
           [Arabidopsis thaliana]
          Length = 852

 Score =  132 bits (333), Expect = 2e-29
 Identities = 71/136 (52%), Positives = 101/136 (74%), Gaps = 1/136 (0%)
 Frame = -1

Query: 506 EDSNNITALGGASIREEDEQLLLGHMEESRISQEAQTVV-EEEERLILQRIPLQRKLAEI 330
           E  N++TA+ G ++REE+EQL  G  E+ R+S+ ++ VV EEEERLILQ+ PLQRKLAEI
Sbjct: 535 EQLNDVTAVSGVNLREEEEQLFSGAKEDGRVSEASRRVVHEEEERLILQKNPLQRKLAEI 594

Query: 329 ISKYGITHISNNVEQCLSMCVKERVLGMISDLTKLSKLRVDRGKAVQQTSMTSDAQLETL 150
           ++K G+  ISN+VE+CLS+CV+ER+ G++S + +LSK RVD  K+  +T +TSD +L+  
Sbjct: 595 MAKAGLKQISNDVERCLSLCVEERMRGLLSHIIRLSKQRVDAEKSRHRTFITSDIRLQIN 654

Query: 149 MMDCKAKELSEKCQDE 102
            M+ K KE  EK Q E
Sbjct: 655 EMNQKVKEEWEKKQAE 670