BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039567
         (345 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI30945.3| unnamed protein product [Vitis vinifera]              151   6e-35
ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containi...   151   6e-35
emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]   151   6e-35
ref|XP_002531431.1| pentatricopeptide repeat-containing protein,...   145   3e-33
ref|XP_003593855.1| Pentatricopeptide repeat-containing protein ...   140   8e-32

>emb|CBI30945.3| unnamed protein product [Vitis vinifera]
          Length = 796

 Score =  151 bits (381), Expect = 6e-35
 Identities = 74/107 (69%), Positives = 84/107 (78%)
 Frame = +3

Query: 24  PDKISYYTVIGFLCKGKRIXXXXXXXXXXXXDANLLPDQVTYNTIILALSKHGHGDEAHQ 203
           PDKISYYTV+GFLCK KRI            D+NLLPDQVTYNT +  LSKHGHGDEA +
Sbjct: 335 PDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALE 394

Query: 204 FLRESEEKGFRVDKVGYSAIVDSFSQQGNLDKAKEIVSEMLSKGCKP 344
           FLRE+EE+ FRVDKVGYSAIV SF ++G +DKAKEIV+EM SKGC P
Sbjct: 395 FLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIP 441


>ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score =  151 bits (381), Expect = 6e-35
 Identities = 74/107 (69%), Positives = 84/107 (78%)
 Frame = +3

Query: 24  PDKISYYTVIGFLCKGKRIXXXXXXXXXXXXDANLLPDQVTYNTIILALSKHGHGDEAHQ 203
           PDKISYYTV+GFLCK KRI            D+NLLPDQVTYNT +  LSKHGHGDEA +
Sbjct: 272 PDKISYYTVMGFLCKEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALE 331

Query: 204 FLRESEEKGFRVDKVGYSAIVDSFSQQGNLDKAKEIVSEMLSKGCKP 344
           FLRE+EE+ FRVDKVGYSAIV SF ++G +DKAKEIV+EM SKGC P
Sbjct: 332 FLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIP 378


>emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  151 bits (381), Expect = 6e-35
 Identities = 74/107 (69%), Positives = 84/107 (78%)
 Frame = +3

Query: 24  PDKISYYTVIGFLCKGKRIXXXXXXXXXXXXDANLLPDQVTYNTIILALSKHGHGDEAHQ 203
           PDKISYYTV+GFLCK KRI            D+NLLPDQVTYNT +  LSKHGHGDEA +
Sbjct: 272 PDKISYYTVMGFLCKEKRIKELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALE 331

Query: 204 FLRESEEKGFRVDKVGYSAIVDSFSQQGNLDKAKEIVSEMLSKGCKP 344
           FLRE+EE+ FRVDKVGYSAIV SF ++G +DKAKEIV+EM SKGC P
Sbjct: 332 FLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNEMFSKGCIP 378


>ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528950|gb|EEF30943.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 737

 Score =  145 bits (367), Expect = 3e-33
 Identities = 68/107 (63%), Positives = 83/107 (77%)
 Frame = +3

Query: 24  PDKISYYTVIGFLCKGKRIXXXXXXXXXXXXDANLLPDQVTYNTIILALSKHGHGDEAHQ 203
           PDK+SYYTV+GFLC+ KRI            D  L PDQVTYNT++  LSKHGH DEA +
Sbjct: 274 PDKVSYYTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALE 333

Query: 204 FLRESEEKGFRVDKVGYSAIVDSFSQQGNLDKAKEIVSEMLSKGCKP 344
           FLRE+EE+GF+VDKVGYSAIV+SF  QG +D+AKEIV+EM++KGC P
Sbjct: 334 FLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSP 380



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 30/107 (28%), Positives = 54/107 (50%)
 Frame = +3

Query: 24  PDKISYYTVIGFLCKGKRIXXXXXXXXXXXXDANLLPDQVTYNTIILALSKHGHGDEAHQ 203
           PD ++Y  V+  LCK  ++                 P+ V+Y  ++  L +HG+  EA +
Sbjct: 380 PDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHG-CKPNTVSYTALLNGLCQHGNSLEARE 438

Query: 204 FLRESEEKGFRVDKVGYSAIVDSFSQQGNLDKAKEIVSEMLSKGCKP 344
            +  SEE  +  + + YS ++    ++G L +A ++V EML+KG  P
Sbjct: 439 MMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFP 485


>ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355482903|gb|AES64106.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  140 bits (354), Expect = 8e-32
 Identities = 64/107 (59%), Positives = 81/107 (75%)
 Frame = +3

Query: 24  PDKISYYTVIGFLCKGKRIXXXXXXXXXXXXDANLLPDQVTYNTIILALSKHGHGDEAHQ 203
           PDK+SYYTV+ FLCK +++            ++NL+PDQVTYNT+I ALSKHGH D+A  
Sbjct: 335 PDKVSYYTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALV 394

Query: 204 FLRESEEKGFRVDKVGYSAIVDSFSQQGNLDKAKEIVSEMLSKGCKP 344
           FLRE+EEKGF +DKVGYSA+VDSF +  N+DKAK +V +M SKGC P
Sbjct: 395 FLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNP 441