BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039566
         (473 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containi...   230   8e-59
emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]   227   9e-58
ref|XP_002531431.1| pentatricopeptide repeat-containing protein,...   219   1e-55
ref|XP_003593855.1| Pentatricopeptide repeat-containing protein ...   213   1e-53
ref|XP_002316718.1| predicted protein [Populus trichocarpa] gi|2...   208   3e-52

>ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 733

 Score =  230 bits (587), Expect = 8e-59
 Identities = 116/156 (74%), Positives = 133/156 (85%)
 Frame = +2

Query: 5   VLYAMLELLSGTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMRVLNLM 184
           V YAMLE+LS TKL + AKR+LRLM +R IERRPEAFGYVMVSYSRAGKLRNAMRVL +M
Sbjct: 136 VYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRVLTMM 195

Query: 185 QKAGVEPDLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCLIKGYCDVYRV 364
           QKAG+EPDLSICNTA+HVLVM NRL+KAVRFL+RMQ V I PNV++YNCLIKGYCD++R+
Sbjct: 196 QKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIEPNVITYNCLIKGYCDLHRL 255

Query: 365 EDALQLIXXXXXXXXXXHPDKISYYTVIGFLCKGKR 472
           EDA++LI           PDKISYYTV+GFLCK KR
Sbjct: 256 EDAMELI--AEMPFKGCSPDKISYYTVMGFLCKEKR 289



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 34/111 (30%), Positives = 54/111 (48%)
 Frame = +2

Query: 53  EAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMRVLNLMQKAGVEPDLSICNTAV 232
           EAKR +      G       F  V+  + +   L  A+ +L+ M  +   PD+    T +
Sbjct: 503 EAKRFMEQCLNNGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLSNKHPDVVTYTTII 562

Query: 233 HVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCLIKGYCDVYRVEDALQLI 385
             L    R+E+A +   +M RVG+ P  V+Y  +I  YC + RVED L+L+
Sbjct: 563 DALGKKGRIEEATKLAMKMLRVGLIPTPVTYRTVIHQYCRMGRVEDLLKLL 613


>emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
          Length = 733

 Score =  227 bits (578), Expect = 9e-58
 Identities = 115/156 (73%), Positives = 131/156 (83%)
 Frame = +2

Query: 5   VLYAMLELLSGTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMRVLNLM 184
           V YAMLE+LS TKL + AKR+LRLM +R IERRPEAFGYVMVSYSRAGKLRNAMR L +M
Sbjct: 136 VYYAMLEILSKTKLCQGAKRVLRLMAKRRIERRPEAFGYVMVSYSRAGKLRNAMRXLTMM 195

Query: 185 QKAGVEPDLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCLIKGYCDVYRV 364
           QKAG+EPDLSICNTA+HVLVM NRL+KAVRFL+RMQ V I PNV++YNCLIKGYCD++R+
Sbjct: 196 QKAGIEPDLSICNTAIHVLVMGNRLDKAVRFLERMQIVEIXPNVITYNCLIKGYCDLHRL 255

Query: 365 EDALQLIXXXXXXXXXXHPDKISYYTVIGFLCKGKR 472
           EDA +LI           PDKISYYTV+GFLCK KR
Sbjct: 256 EDAXELI--AEMPFKGCSPDKISYYTVMGFLCKEKR 289


>ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528950|gb|EEF30943.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 737

 Score =  219 bits (559), Expect = 1e-55
 Identities = 110/156 (70%), Positives = 132/156 (84%)
 Frame = +2

Query: 5   VLYAMLELLSGTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMRVLNLM 184
           V Y ML++LS TKL + A+R+LRLM RRGI RRPEAF +VMVSYSRAGKLRNAM+VL +M
Sbjct: 138 VYYMMLQVLSKTKLCQGARRVLRLMVRRGIARRPEAFAHVMVSYSRAGKLRNAMQVLTMM 197

Query: 185 QKAGVEPDLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCLIKGYCDVYRV 364
           QKAGVEP+L ICNTA+HVLVMAN+LEKA+RFL+RMQ VGI+PNVV+YNCLIKGYCD+Y+V
Sbjct: 198 QKAGVEPNLLICNTAIHVLVMANKLEKALRFLERMQLVGITPNVVTYNCLIKGYCDLYQV 257

Query: 365 EDALQLIXXXXXXXXXXHPDKISYYTVIGFLCKGKR 472
           E A++LI           PDK+SYYTV+GFLC+ KR
Sbjct: 258 EHAMELIAEMPFKGCP--PDKVSYYTVMGFLCQDKR 291



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 31/111 (27%), Positives = 53/111 (47%)
 Frame = +2

Query: 17  MLELLSGTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMRVLNLMQKAG 196
           ++ +LS      EA   LR  + RG +     +  ++ S+   G++  A  ++N M   G
Sbjct: 318 LVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKG 377

Query: 197 VEPDLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCLIKGYC 349
             PD+      V+ L    ++E+A + L +M + G  PN VSY  L+ G C
Sbjct: 378 CSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLC 428


>ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355482903|gb|AES64106.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 790

 Score =  213 bits (542), Expect = 1e-53
 Identities = 105/156 (67%), Positives = 128/156 (82%)
 Frame = +2

Query: 5   VLYAMLELLSGTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMRVLNLM 184
           V Y ML++LS T+L + A+RILRLM RRGIER PEAF YVMVSYSRAG LRNA+R+L LM
Sbjct: 199 VYYTMLDILSKTRLCQGARRILRLMTRRGIERSPEAFSYVMVSYSRAGMLRNALRILTLM 258

Query: 185 QKAGVEPDLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCLIKGYCDVYRV 364
           QKAGVEPDLSICNTA++VLV  N+LEKA+RFL+RM+  GI P++VSYNCLIKGYCDV+R+
Sbjct: 259 QKAGVEPDLSICNTAIYVLVKGNKLEKALRFLERMKVAGIEPDIVSYNCLIKGYCDVHRI 318

Query: 365 EDALQLIXXXXXXXXXXHPDKISYYTVIGFLCKGKR 472
           +DAL+LI           PDK+SYYTV+ FLCK ++
Sbjct: 319 DDALELIAEMPFKGCP--PDKVSYYTVMAFLCKDRK 352


>ref|XP_002316718.1| predicted protein [Populus trichocarpa] gi|222859783|gb|EEE97330.1|
           predicted protein [Populus trichocarpa]
          Length = 684

 Score =  208 bits (530), Expect = 3e-52
 Identities = 104/156 (66%), Positives = 128/156 (82%)
 Frame = +2

Query: 5   VLYAMLELLSGTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMRVLNLM 184
           V   ML++LS TKL + A+R+LRLM RRGI+R P+ F  VMVSYSRAGKLRNAM+VL +M
Sbjct: 85  VYCVMLDVLSKTKLCQGARRVLRLMVRRGIQRTPQDFCCVMVSYSRAGKLRNAMQVLTMM 144

Query: 185 QKAGVEPDLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCLIKGYCDVYRV 364
           QKAG+EP+L +CNTA+HVLVMAN LEKA+RFL+RMQ +GI PNVV+YNCLIKGYCD++RV
Sbjct: 145 QKAGIEPNLLVCNTAIHVLVMANMLEKALRFLERMQLLGIMPNVVTYNCLIKGYCDLHRV 204

Query: 365 EDALQLIXXXXXXXXXXHPDKISYYTVIGFLCKGKR 472
           EDA++LI           PDK+SYYTV+GFLCK +R
Sbjct: 205 EDAMELI--SEMPLKGCSPDKVSYYTVMGFLCKNRR 238



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 38/152 (25%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
 Frame = +2

Query: 17  MLELLSGTKLRKEAKRILRLMKRRGIERRPEAFGYVMVSYSRAGKLRNAMRVLNLMQKAG 196
           ++ +L   +   EA + LR  ++RG +     +  ++ SY + G++  A  ++N M   G
Sbjct: 264 LIHMLCKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRG 323

Query: 197 VEPDLSICNTAVHVLVMANRLEKAVRFLDRMQRVGISPNVVSYNCLIKGYCDVYRVEDAL 376
             PD+      ++    A  + +A + L +M + G  PN VSY   +KG C      +A 
Sbjct: 324 CIPDVVTYTAIINGFSQAGEVGQARKMLQQMYKHGCKPNTVSYTAFLKGLCQKGNSSEAR 383

Query: 377 QLIXXXXXXXXXXHPDKISYYTVI-GFLCKGK 469
           +++           P+ I+Y  V+ GF  +GK
Sbjct: 384 EMMKASEEQWWT--PNAITYSVVMHGFRREGK 413