BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039565
         (378 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003567228.1| PREDICTED: putative ribonuclease H protein A...    65   4e-09
ref|XP_003622120.1| Pentatricopeptide repeat-containing protein ...    65   4e-09
gb|EEC83406.1| hypothetical protein OsI_28856 [Oryza sativa Indi...    65   4e-09
gb|EEC73134.1| hypothetical protein OsI_07152 [Oryza sativa Indi...    64   2e-08
gb|ABF97084.1| retrotransposon protein, putative, unclassified [...    64   2e-08

>ref|XP_003567228.1| PREDICTED: putative ribonuclease H protein At1g65750-like
           [Brachypodium distachyon]
          Length = 820

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 43/123 (34%), Positives = 64/123 (52%), Gaps = 8/123 (6%)
 Frame = -3

Query: 373 ETFSWKYDIIDSIFIPHIRDVILHTKIHPHTHS*KMF--WSLEKNGCFSVKSAYNWFLNK 200
           ET +WK + +   F+P   D I  +KI P  +    F  W+ EK G FSV+SAY   L+ 
Sbjct: 447 ETGAWKMEELQRWFLPVDVDAI--SKIWPSIYRDDDFLSWNCEKTGVFSVRSAYKLGLHL 504

Query: 199 DRIILLNTSN-HYGYLKQAWNLIWKIHSPLRINFFLWKMMRNTLPTR-----KILFDRHN 38
           +++  L TS+ H       W+LIWK   P ++  F W++  N+L TR     + + D   
Sbjct: 505 EQVDQLATSSAHPDGSNPCWDLIWKCPVPQKVRIFAWRVATNSLATRLNKKKRKIEDFST 564

Query: 37  CTF 29
           CTF
Sbjct: 565 CTF 567


>ref|XP_003622120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355497135|gb|AES78338.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 894

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 1/119 (0%)
 Frame = -3

Query: 361 WKYDIIDSIFIPHIRDV-ILHTKIHPHTHS*KMFWSLEKNGCFSVKSAYNWFLNKDRIIL 185
           W  ++I   F  +     I +T + P        W  E++G +SVKSAY   LN D  ++
Sbjct: 189 WNMELIKLFFFDNATARNIFNTPLFPSVAHDVPVWMFERDGAYSVKSAYKDILNHDVTVV 248

Query: 184 LNTSNHYGYLKQAWNLIWKIHSPLRINFFLWKMMRNTLPTRKILFDRHNCTFDRCPRCD 8
                 +  ++  WN IW +  P ++  FLW+  RN LPTR  L  +     DRC  CD
Sbjct: 249 ------HHRVEGNWNCIWSLKLPPKVKNFLWRACRNCLPTRIRLQSKGVQCTDRCAMCD 301


>gb|EEC83406.1| hypothetical protein OsI_28856 [Oryza sativa Indica Group]
          Length = 1143

 Score = 65.5 bits (158), Expect = 4e-09
 Identities = 39/119 (32%), Positives = 58/119 (48%)
 Frame = -3

Query: 364  SWKYDIIDSIFIPHIRDVILHTKIHPHTHS*KMFWSLEKNGCFSVKSAYNWFLNKDRIIL 185
            SW  + I+  F+    DVI      P      + W  +K G FSV+SAY    N   + +
Sbjct: 870  SWNAEKINRYFLKVDADVIYKICTSPRVECDFLAWHPDKTGQFSVRSAYALAANLANMEV 929

Query: 184  LNTSNHYGYLKQAWNLIWKIHSPLRINFFLWKMMRNTLPTRKILFDRHNCTFDRCPRCD 8
             ++S+    + +AW+LIWK + P ++  F WK   N+LPT      R+    D CP CD
Sbjct: 930  PSSSST-ATVNKAWDLIWKCNVPQKVRIFAWKAASNSLPTMVKKKKRNLEKTDMCPICD 987


>gb|EEC73134.1| hypothetical protein OsI_07152 [Oryza sativa Indica Group]
          Length = 647

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 33/100 (33%), Positives = 54/100 (54%)
 Frame = -3

Query: 364 SWKYDIIDSIFIPHIRDVILHTKIHPHTHS*KMFWSLEKNGCFSVKSAYNWFLNKDRIIL 185
           SW  +++ +IF+P   + IL  KI        + W  ++ G FSV+SAY   +   R+  
Sbjct: 347 SWDENLVSAIFLPVDVEEILKIKISSRQEEDFVAWFPDRLGRFSVRSAYQLAMQIARLDE 406

Query: 184 LNTSNHYGYLKQAWNLIWKIHSPLRINFFLWKMMRNTLPT 65
            + S+ Y  +K+ WNLIW  + P ++  F W+   N+LPT
Sbjct: 407 CSCSSDYA-IKKGWNLIWSCNVPQKVKIFGWRAATNSLPT 445


>gb|ABF97084.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1184

 Score = 63.5 bits (153), Expect = 2e-08
 Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
 Frame = -3

Query: 361  WKYDIIDSIFIPHIRDVILHTKIHPHTHS*KMFWSLEKNGCFSVKSAYN--W---FLNKD 197
            W  D+ID++F P   + IL   I        + W   ++G FSV+SAY+  W   F +K+
Sbjct: 788  WDEDLIDTLFWPIDANRILQIPISAGRED-FVAWHHTRSGIFSVRSAYHCQWNAKFGSKE 846

Query: 196  RIILLNTSNHYGYLKQAWNLIWKIHSPLRINFFLWKMMRNTLPTRKILFDRHNCTFDRCP 17
            R+    +S+     +  W+ +WK+  P +I  F W+M+   +P + IL D+H      CP
Sbjct: 847  RLPDGASSSS----RPVWDNLWKLEIPPKIKIFAWRMLHGVIPCKGILADKHIAVQGGCP 902

Query: 16   RCDS 5
             C S
Sbjct: 903  VCSS 906