BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039561
         (510 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containi...   248   5e-64
ref|XP_002301427.1| predicted protein [Populus trichocarpa] gi|2...   238   5e-61
ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containi...   231   6e-59
ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containi...   221   4e-56
ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containi...   221   4e-56

>ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  248 bits (632), Expect = 5e-64
 Identities = 118/169 (69%), Positives = 139/169 (82%)
 Frame = +2

Query: 2   PACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVFKEIRHTKNL 181
           PACANLGALE+GERIEV  R  G+ KNL+VSNALLEMYA+CGRIDKA  VF+EI   +NL
Sbjct: 223 PACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNL 282

Query: 182 CSWNTMIMGLAVHGRWEAGLKLFREMLTGGISPDDITFVGVLLACTHGALVREAWKFFES 361
           CSWN+MIMGLAVHGR +  ++LF +ML  G +PDD+TFVGVLLACTHG +V E   FFES
Sbjct: 283 CSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFFES 342

Query: 362 MHKDFCITPKLQHYGCMVDLLGRAGFLNEAYGLLKKMPMKPDAVVWGAL 508
           M +DF I PKL+HYGCMVDLLGRAG L EA+ L+ +MPM+PD+VVWG L
Sbjct: 343 MERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTL 391



 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 48/201 (23%), Positives = 90/201 (44%), Gaps = 33/201 (16%)
 Frame = +2

Query: 5   ACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVFKEIRHTKNLC 184
           ACA+L + + G  +     + GF  ++F   AL++MYAK G +  A + F E+   +++ 
Sbjct: 91  ACASLSSHQQGRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMT-VRDVP 149

Query: 185 SWNTMIMGLAVHGRWEAGLKLFREMLTGGIS----------------------------- 277
           +WN+MI G A  G  E  L+LFR M    ++                             
Sbjct: 150 TWNSMIAGYARCGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEET 209

Query: 278 ---PDDITFVGVLLACTH-GALVREAWKFFESMHKDFCITPKLQHYGCMVDLLGRAGFLN 445
              P+++T   VL AC + GAL  E  +  E   +       L     ++++  R G ++
Sbjct: 210 EMRPNEVTLASVLPACANLGAL--EVGERIEVYARGNGYFKNLYVSNALLEMYARCGRID 267

Query: 446 EAYGLLKKMPMKPDAVVWGAL 508
           +A+G+ +++  + +   W ++
Sbjct: 268 KAWGVFEEIDGRRNLCSWNSM 288


>ref|XP_002301427.1| predicted protein [Populus trichocarpa] gi|222843153|gb|EEE80700.1|
           predicted protein [Populus trichocarpa]
          Length = 442

 Score =  238 bits (606), Expect = 5e-61
 Identities = 110/168 (65%), Positives = 132/168 (78%)
 Frame = +2

Query: 5   ACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVFKEIRHTKNLC 184
           ACA LGALE+GERIE   R+ G  KNL+VSN LLEMYA+CG+ID A  VF EI   +NLC
Sbjct: 152 ACAKLGALEVGERIESYARDNGLMKNLYVSNTLLEMYARCGKIDAARHVFNEIGKRRNLC 211

Query: 185 SWNTMIMGLAVHGRWEAGLKLFREMLTGGISPDDITFVGVLLACTHGALVREAWKFFESM 364
           SWN+M+MGLAVHGR    L+L+ +ML  GI PDD+TFVG++LACTHG LV + W+ F+SM
Sbjct: 212 SWNSMMMGLAVHGRSNEALQLYDQMLGEGIEPDDVTFVGLILACTHGGLVAKGWQLFQSM 271

Query: 365 HKDFCITPKLQHYGCMVDLLGRAGFLNEAYGLLKKMPMKPDAVVWGAL 508
             +F I PKL+HYGCMVDLLGRAG L EAY L+K MPMKPD+V+WG L
Sbjct: 272 ETNFSIVPKLEHYGCMVDLLGRAGELQEAYDLVKSMPMKPDSVIWGTL 319



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 36/129 (27%), Positives = 69/129 (53%)
 Frame = +2

Query: 2   PACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVFKEIRHTKNL 181
           PACA+  +L  G+ I     + GF  +++   AL++MYAK G +  A +VF E+   +++
Sbjct: 18  PACASFYSLLHGKVIHTHFIKSGFDFDVYALTALVDMYAKLGVLMLARQVFDEMT-VRDI 76

Query: 182 CSWNTMIMGLAVHGRWEAGLKLFREMLTGGISPDDITFVGVLLACTHGALVREAWKFFES 361
            +WN++I G +  G  E  L+LF+ M +  +    +++  ++   +   +  +A + F  
Sbjct: 77  PTWNSLIAGYSRSGDMEGALELFKLMPSRSV----VSWTTMISGYSQNGMYTKALEMFLK 132

Query: 362 MHKDFCITP 388
           M KD  + P
Sbjct: 133 MEKDKEVRP 141


>ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Glycine max]
          Length = 512

 Score =  231 bits (588), Expect = 6e-59
 Identities = 110/169 (65%), Positives = 134/169 (79%)
 Frame = +2

Query: 2   PACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVFKEIRHTKNL 181
           PA ANLGALE+G+R+E   R+ GF KNL+VSNA+LEMYAKCG+ID A +VF EI   +NL
Sbjct: 224 PAFANLGALEIGQRVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNL 283

Query: 182 CSWNTMIMGLAVHGRWEAGLKLFREMLTGGISPDDITFVGVLLACTHGALVREAWKFFES 361
           CSWN+MIMGLAVHG     LKL+ +ML  G SPDD+TFVG+LLACTHG +V +    F+S
Sbjct: 284 CSWNSMIMGLAVHGECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKS 343

Query: 362 MHKDFCITPKLQHYGCMVDLLGRAGFLNEAYGLLKKMPMKPDAVVWGAL 508
           M   F I PKL+HYGCMVDLLGRAG L EAY ++++MPMKPD+V+WGAL
Sbjct: 344 MTTSFNIIPKLEHYGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGAL 392



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 28/85 (32%), Positives = 49/85 (57%)
 Frame = +2

Query: 5   ACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVFKEIRHTKNLC 184
           AC +L +  +G+ +     + GF  +LF + ALL+MY K G ++ A ++F ++   + + 
Sbjct: 92  ACTSLSSPSLGQMLHTHFIKSGFEPDLFAATALLDMYTKVGTLELARKLFDQM-PVRGVP 150

Query: 185 SWNTMIMGLAVHGRWEAGLKLFREM 259
           +WN M+ G A  G  +  L+LFR M
Sbjct: 151 TWNAMMAGHARFGDMDVALELFRLM 175


>ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  221 bits (564), Expect = 4e-56
 Identities = 102/169 (60%), Positives = 130/169 (76%)
 Frame = +2

Query: 2   PACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVFKEIRHTKNL 181
           PAC+ LGAL++G+RIE   R  GF KN +VSNA+LE++A+CG I++A +VF EI   +NL
Sbjct: 223 PACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNL 282

Query: 182 CSWNTMIMGLAVHGRWEAGLKLFREMLTGGISPDDITFVGVLLACTHGALVREAWKFFES 361
           CSWNTMIMGLAVHGR    L+L+ +ML   + PDD+TFVG+LLACTHG +V E  + FES
Sbjct: 283 CSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFES 342

Query: 362 MHKDFCITPKLQHYGCMVDLLGRAGFLNEAYGLLKKMPMKPDAVVWGAL 508
           M   F + PKL+HYGC+VDLLGRAG L EAY L++ MPM PD+V+WG L
Sbjct: 343 MESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTL 391



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 33/202 (16%)
 Frame = +2

Query: 2   PACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVFKEIRHTKNL 181
           PACA+L  +  G+ +     + GFA ++F   ALL+MYAK G +  A ++F E+   +++
Sbjct: 90  PACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEM-PVRDI 148

Query: 182 CSWNTMIMGLAVHGRWEAGLKLFREM-----------LTG-------------------- 268
            +WN++I G A  G  EA L+LF +M           ++G                    
Sbjct: 149 PTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENE 208

Query: 269 -GISPDDITFVGVLLACTH-GALVREAWKFFESMHKDFCITPKLQHYGCMVDLLGRAGFL 442
            G  P++++   VL AC+  GAL  +  K  E+  ++            +++L  R G +
Sbjct: 209 KGTKPNEVSIASVLPACSQLGAL--DIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNI 266

Query: 443 NEAYGLLKKMPMKPDAVVWGAL 508
            EA  +  ++  K +   W  +
Sbjct: 267 EEAQQVFDEIGSKRNLCSWNTM 288


>ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 589

 Score =  221 bits (564), Expect = 4e-56
 Identities = 102/169 (60%), Positives = 130/169 (76%)
 Frame = +2

Query: 2   PACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVFKEIRHTKNL 181
           PAC+ LGAL++G+RIE   R  GF KN +VSNA+LE++A+CG I++A +VF EI   +NL
Sbjct: 223 PACSQLGALDIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNL 282

Query: 182 CSWNTMIMGLAVHGRWEAGLKLFREMLTGGISPDDITFVGVLLACTHGALVREAWKFFES 361
           CSWNTMIMGLAVHGR    L+L+ +ML   + PDD+TFVG+LLACTHG +V E  + FES
Sbjct: 283 CSWNTMIMGLAVHGRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFES 342

Query: 362 MHKDFCITPKLQHYGCMVDLLGRAGFLNEAYGLLKKMPMKPDAVVWGAL 508
           M   F + PKL+HYGC+VDLLGRAG L EAY L++ MPM PD+V+WG L
Sbjct: 343 MESKFQVAPKLEHYGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTL 391



 Score = 65.9 bits (159), Expect = 3e-09
 Identities = 52/202 (25%), Positives = 92/202 (45%), Gaps = 33/202 (16%)
 Frame = +2

Query: 2   PACANLGALEMGERIEVLVREKGFAKNLFVSNALLEMYAKCGRIDKAMRVFKEIRHTKNL 181
           PACA+L  +  G+ +     + GFA ++F   ALL+MYAK G +  A ++F E+   +++
Sbjct: 90  PACASLFNVYPGQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEM-PVRDI 148

Query: 182 CSWNTMIMGLAVHGRWEAGLKLFREM-----------LTG-------------------- 268
            +WN++I G A  G  EA L+LF +M           ++G                    
Sbjct: 149 PTWNSLIAGYARSGHMEAALELFNKMPVRNVISWTALISGYAQNGKYAKALEMFIGLENE 208

Query: 269 -GISPDDITFVGVLLACTH-GALVREAWKFFESMHKDFCITPKLQHYGCMVDLLGRAGFL 442
            G  P++++   VL AC+  GAL  +  K  E+  ++            +++L  R G +
Sbjct: 209 KGTKPNEVSIASVLPACSQLGAL--DIGKRIEAYARNNGFFKNAYVSNAVLELHARCGNI 266

Query: 443 NEAYGLLKKMPMKPDAVVWGAL 508
            EA  +  ++  K +   W  +
Sbjct: 267 EEAQQVFDEIGSKRNLCSWNTM 288