BLASTX nr result
ID: Coptis25_contig00039502
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00039502
(319 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containi... 146 2e-33
emb|CBI18522.3| unnamed protein product [Vitis vinifera] 146 2e-33
emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera] 146 2e-33
ref|XP_002518234.1| pentatricopeptide repeat-containing protein,... 132 4e-29
ref|NP_001078759.1| pentatricopeptide repeat-containing protein ... 132 4e-29
>ref|XP_003634559.1| PREDICTED: pentatricopeptide repeat-containing protein At5g57250,
mitochondrial-like [Vitis vinifera]
Length = 993
Score = 146 bits (368), Expect = 2e-33
Identities = 72/106 (67%), Positives = 83/106 (78%)
Frame = +1
Query: 1 ILIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEEL 180
ILIDGFS+EG VEKA+GFL +MKKDGL+PNLVTYTAIM GFCK+GKL+EA+ LF+ VE L
Sbjct: 198 ILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENL 257
Query: 181 GIQVDEITYSTLIDGLCRRGDFDRVFLLLEEMEXXXXXXXXXTYNT 318
GI+VDE Y TLIDG C RGD D VF LLE+ME TYN+
Sbjct: 258 GIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNS 303
Score = 74.7 bits (182), Expect = 7e-12
Identities = 38/106 (35%), Positives = 60/106 (56%)
Frame = +1
Query: 1 ILIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEEL 180
I+ID KEG+++KA+ +KK G+ N+ Y +++ G C++G L +AF LF +E++
Sbjct: 644 IMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKI 703
Query: 181 GIQVDEITYSTLIDGLCRRGDFDRVFLLLEEMEXXXXXXXXXTYNT 318
+ EITY+TLID LC+ G L E+M YN+
Sbjct: 704 DLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNS 749
Score = 64.3 bits (155), Expect = 1e-08
Identities = 31/91 (34%), Positives = 54/91 (59%)
Frame = +1
Query: 4 LIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEELG 183
LIDG+ K GN+E+A+ L ++K ++P+ T +A++ G+C +G +E A G F ++
Sbjct: 750 LIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKD 809
Query: 184 IQVDEITYSTLIDGLCRRGDFDRVFLLLEEM 276
I D + + L+ GLC +G + +L EM
Sbjct: 810 ILPDFLGFMYLVRGLCAKGRMEEARGILREM 840
Score = 61.6 bits (148), Expect = 6e-08
Identities = 30/74 (40%), Positives = 46/74 (62%)
Frame = +1
Query: 4 LIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEELG 183
LIDGF G+++ G L +M+K G+ P++VTY +I+ G CK G+ EA + + G
Sbjct: 269 LIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEVSK-----G 323
Query: 184 IQVDEITYSTLIDG 225
I D +T+STL+ G
Sbjct: 324 IAGDAVTFSTLLHG 337
Score = 61.2 bits (147), Expect = 8e-08
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = +1
Query: 4 LIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEELG 183
LID KEG + A +M G PN+ Y +++ G+CK G +EEA L ++
Sbjct: 715 LIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARC 774
Query: 184 IQVDEITYSTLIDGLCRRGDFD 249
I+ DE T S LI+G C +GD +
Sbjct: 775 IKPDEFTVSALINGYCHKGDME 796
>emb|CBI18522.3| unnamed protein product [Vitis vinifera]
Length = 808
Score = 146 bits (368), Expect = 2e-33
Identities = 72/106 (67%), Positives = 83/106 (78%)
Frame = +1
Query: 1 ILIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEEL 180
ILIDGFS+EG VEKA+GFL +MKKDGL+PNLVTYTAIM GFCK+GKL+EA+ LF+ VE L
Sbjct: 198 ILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENL 257
Query: 181 GIQVDEITYSTLIDGLCRRGDFDRVFLLLEEMEXXXXXXXXXTYNT 318
GI+VDE Y TLIDG C RGD D VF LLE+ME TYN+
Sbjct: 258 GIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNS 303
Score = 74.7 bits (182), Expect = 7e-12
Identities = 38/106 (35%), Positives = 60/106 (56%)
Frame = +1
Query: 1 ILIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEEL 180
I+ID KEG+++KA+ +KK G+ N+ Y +++ G C++G L +AF LF +E++
Sbjct: 499 IMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKI 558
Query: 181 GIQVDEITYSTLIDGLCRRGDFDRVFLLLEEMEXXXXXXXXXTYNT 318
+ EITY+TLID LC+ G L E+M YN+
Sbjct: 559 DLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNS 604
Score = 64.3 bits (155), Expect = 1e-08
Identities = 31/91 (34%), Positives = 54/91 (59%)
Frame = +1
Query: 4 LIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEELG 183
LIDG+ K GN+E+A+ L ++K ++P+ T +A++ G+C +G +E A G F ++
Sbjct: 605 LIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKD 664
Query: 184 IQVDEITYSTLIDGLCRRGDFDRVFLLLEEM 276
I D + + L+ GLC +G + +L EM
Sbjct: 665 ILPDFLGFMYLVRGLCAKGRMEEARGILREM 695
Score = 61.6 bits (148), Expect = 6e-08
Identities = 30/74 (40%), Positives = 46/74 (62%)
Frame = +1
Query: 4 LIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEELG 183
LIDGF G+++ G L +M+K G+ P++VTY +I+ G CK G+ EA + + G
Sbjct: 269 LIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEVSK-----G 323
Query: 184 IQVDEITYSTLIDG 225
I D +T+STL+ G
Sbjct: 324 IAGDAVTFSTLLHG 337
Score = 61.2 bits (147), Expect = 8e-08
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = +1
Query: 4 LIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEELG 183
LID KEG + A +M G PN+ Y +++ G+CK G +EEA L ++
Sbjct: 570 LIDSLCKEGCLLDAKQLFEKMVIKGFNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARC 629
Query: 184 IQVDEITYSTLIDGLCRRGDFD 249
I+ DE T S LI+G C +GD +
Sbjct: 630 IKPDEFTVSALINGYCHKGDME 651
>emb|CAN75781.1| hypothetical protein VITISV_012425 [Vitis vinifera]
Length = 993
Score = 146 bits (368), Expect = 2e-33
Identities = 72/106 (67%), Positives = 83/106 (78%)
Frame = +1
Query: 1 ILIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEEL 180
ILIDGFS+EG VEKA+GFL +MKKDGL+PNLVTYTAIM GFCK+GKL+EA+ LF+ VE L
Sbjct: 198 ILIDGFSREGYVEKAIGFLEKMKKDGLKPNLVTYTAIMLGFCKKGKLDEAYTLFKMVENL 257
Query: 181 GIQVDEITYSTLIDGLCRRGDFDRVFLLLEEMEXXXXXXXXXTYNT 318
GI+VDE Y TLIDG C RGD D VF LLE+ME TYN+
Sbjct: 258 GIEVDEFMYVTLIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNS 303
Score = 74.7 bits (182), Expect = 7e-12
Identities = 39/106 (36%), Positives = 61/106 (57%)
Frame = +1
Query: 1 ILIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEEL 180
I+ID KEG+++KA+ +KK G+ N+ Y +++ G C++G L +AF LF +E++
Sbjct: 644 IMIDVLCKEGHLDKALDLCAFVKKKGIALNIYAYNSVINGLCRQGCLVQAFRLFDSLEKI 703
Query: 181 GIQVDEITYSTLIDGLCRRGDFDRVFLLLEEMEXXXXXXXXXTYNT 318
+ EITY+TLID LC+ G L E+M YN+
Sbjct: 704 DLVPSEITYATLIDSLCKEGCLLDAKQLFEKMVXKGFNPNVRVYNS 749
Score = 64.3 bits (155), Expect = 1e-08
Identities = 31/91 (34%), Positives = 54/91 (59%)
Frame = +1
Query: 4 LIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEELG 183
LIDG+ K GN+E+A+ L ++K ++P+ T +A++ G+C +G +E A G F ++
Sbjct: 750 LIDGYCKFGNMEEALNLLIDLKARCIKPDEFTVSALINGYCHKGDMEGALGFFFEFKKKD 809
Query: 184 IQVDEITYSTLIDGLCRRGDFDRVFLLLEEM 276
I D + + L+ GLC +G + +L EM
Sbjct: 810 ILPDFLGFMYLVRGLCAKGRMEEARGILREM 840
Score = 62.0 bits (149), Expect = 5e-08
Identities = 31/82 (37%), Positives = 45/82 (54%)
Frame = +1
Query: 4 LIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEELG 183
LID KEG + A +M G PN+ Y +++ G+CK G +EEA L ++
Sbjct: 715 LIDSLCKEGCLLDAKQLFEKMVXKGFNPNVRVYNSLIDGYCKFGNMEEALNLLIDLKARC 774
Query: 184 IQVDEITYSTLIDGLCRRGDFD 249
I+ DE T S LI+G C +GD +
Sbjct: 775 IKPDEFTVSALINGYCHKGDME 796
Score = 61.6 bits (148), Expect = 6e-08
Identities = 30/74 (40%), Positives = 46/74 (62%)
Frame = +1
Query: 4 LIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEELG 183
LIDGF G+++ G L +M+K G+ P++VTY +I+ G CK G+ EA + + G
Sbjct: 269 LIDGFCTRGDIDCVFGLLEDMEKRGISPSIVTYNSIINGLCKAGRTSEADEVSK-----G 323
Query: 184 IQVDEITYSTLIDG 225
I D +T+STL+ G
Sbjct: 324 IAGDAVTFSTLLHG 337
>ref|XP_002518234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223542581|gb|EEF44120.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 932
Score = 132 bits (331), Expect = 4e-29
Identities = 61/105 (58%), Positives = 79/105 (75%)
Frame = +1
Query: 1 ILIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEEL 180
ILIDGFSKEG+VEK+VGFL+ M +G PNLVTYTAI+ GFC++GK++EAF +F+ VE L
Sbjct: 295 ILIDGFSKEGSVEKSVGFLHHMLANGSEPNLVTYTAIILGFCRKGKIDEAFAIFKLVENL 354
Query: 181 GIQVDEITYSTLIDGLCRRGDFDRVFLLLEEMEXXXXXXXXXTYN 315
GI++DE Y+ L+DG C +GDFDR + L+EEME YN
Sbjct: 355 GIKLDEFIYAILVDGFCLKGDFDRAYQLIEEMEKKGITPTIVAYN 399
Score = 67.4 bits (163), Expect = 1e-09
Identities = 37/92 (40%), Positives = 50/92 (54%), Gaps = 1/92 (1%)
Frame = +1
Query: 4 LIDGFSKEGNVEKAVGFL-NEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEEL 180
++ GF K G E A+GF N +K L+PNLVTYTA++ C G+ +E F L +EE
Sbjct: 190 IVSGFCKMGKPELAMGFFENSLKLGALKPNLVTYTAVVSSLCMLGRADEVFDLVCEMEEE 249
Query: 181 GIQVDEITYSTLIDGLCRRGDFDRVFLLLEEM 276
G+ D + YS I G R G F +EM
Sbjct: 250 GLAFDVVFYSCWICGYFRNGVFIEAIRKHKEM 281
Score = 55.8 bits (133), Expect = 4e-06
Identities = 27/91 (29%), Positives = 49/91 (53%)
Frame = +1
Query: 7 IDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEELGI 186
I G+ + G +A+ EM K G+ + + YT ++ GF K G +E++ G + G
Sbjct: 262 ICGYFRNGVFIEAIRKHKEMVKKGISSDTIGYTILIDGFSKEGSVEKSVGFLHHMLANGS 321
Query: 187 QVDEITYSTLIDGLCRRGDFDRVFLLLEEME 279
+ + +TY+ +I G CR+G D F + + +E
Sbjct: 322 EPNLVTYTAIILGFCRKGKIDEAFAIFKLVE 352
>ref|NP_001078759.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635742|sp|Q9LVD3.2|PP434_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g57250, mitochondrial; Flags: Precursor
gi|332009488|gb|AED96871.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 971
Score = 132 bits (331), Expect = 4e-29
Identities = 63/106 (59%), Positives = 79/106 (74%)
Frame = +1
Query: 1 ILIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEEL 180
ILIDG SKEGNVE+A+G L +M K+G+ PNL+TYTAI+RG CK GKLEEAF LF R+ +
Sbjct: 282 ILIDGLSKEGNVEEALGLLGKMIKEGVEPNLITYTAIIRGLCKMGKLEEAFVLFNRILSV 341
Query: 181 GIQVDEITYSTLIDGLCRRGDFDRVFLLLEEMEXXXXXXXXXTYNT 318
GI+VDE Y TLIDG+CR+G+ +R F +L +ME TYNT
Sbjct: 342 GIEVDEFLYVTLIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNT 387
Score = 72.4 bits (176), Expect = 4e-11
Identities = 38/106 (35%), Positives = 57/106 (53%)
Frame = +1
Query: 1 ILIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEEL 180
I+I+G KEG + KA+ + K G+ N +TY +++ G C++G L EA LF +E +
Sbjct: 660 IIINGLCKEGFLVKALNLCSFAKSRGVTLNTITYNSLINGLCQQGCLVEALRLFDSLENI 719
Query: 181 GIQVDEITYSTLIDGLCRRGDFDRVFLLLEEMEXXXXXXXXXTYNT 318
G+ E+TY LID LC+ G F LL+ M YN+
Sbjct: 720 GLVPSEVTYGILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNS 765
Score = 62.8 bits (151), Expect = 3e-08
Identities = 32/93 (34%), Positives = 49/93 (52%)
Frame = +1
Query: 1 ILIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEEL 180
ILID KEG A L+ M GL PN++ Y +I+ G+CK G+ E+A + R
Sbjct: 730 ILIDNLCKEGLFLDAEKLLDSMVSKGLVPNIIIYNSIVDGYCKLGQTEDAMRVVSRKMMG 789
Query: 181 GIQVDEITYSTLIDGLCRRGDFDRVFLLLEEME 279
+ D T S++I G C++GD + + E +
Sbjct: 790 RVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFK 822
Score = 61.2 bits (147), Expect = 8e-08
Identities = 29/84 (34%), Positives = 51/84 (60%)
Frame = +1
Query: 4 LIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEELG 183
LIDG ++GN+ +A L +M++ G++P+++TY ++ G C G++ EA + + G
Sbjct: 353 LIDGICRKGNLNRAFSMLGDMEQRGIQPSILTYNTVINGLCMAGRVSEADEVSK-----G 407
Query: 184 IQVDEITYSTLIDGLCRRGDFDRV 255
+ D ITYSTL+D + + D V
Sbjct: 408 VVGDVITYSTLLDSYIKVQNIDAV 431
Score = 59.7 bits (143), Expect = 2e-07
Identities = 29/90 (32%), Positives = 53/90 (58%)
Frame = +1
Query: 7 IDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEELGI 186
I G+ K G + A+ EM + G+ ++V+Y+ ++ G K G +EEA GL ++ + G+
Sbjct: 249 IHGYFKGGALVDALMQDREMVEKGMNRDVVSYSILIDGLSKEGNVEEALGLLGKMIKEGV 308
Query: 187 QVDEITYSTLIDGLCRRGDFDRVFLLLEEM 276
+ + ITY+ +I GLC+ G + F+L +
Sbjct: 309 EPNLITYTAIIRGLCKMGKLEEAFVLFNRI 338
Score = 58.9 bits (141), Expect = 4e-07
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Frame = +1
Query: 4 LIDGFSKEGNVEKAVGFLNEMKKDG-LRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEEL 180
+I GF K G E A+GF G L PNLVTYT ++ C+ GK++E L +R+E+
Sbjct: 177 VISGFCKIGKPELALGFFESAVDSGVLVPNLVTYTTLVSALCQLGKVDEVRDLVRRLEDE 236
Query: 181 GIQVDEITYSTLIDGLCRRG 240
G + D + YS I G + G
Sbjct: 237 GFEFDCVFYSNWIHGYFKGG 256
Score = 58.9 bits (141), Expect = 4e-07
Identities = 27/91 (29%), Positives = 49/91 (53%)
Frame = +1
Query: 4 LIDGFSKEGNVEKAVGFLNEMKKDGLRPNLVTYTAIMRGFCKRGKLEEAFGLFQRVEELG 183
++DG+ K G E A+ ++ + P+ T +++++G+CK+G +EEA +F ++
Sbjct: 766 IVDGYCKLGQTEDAMRVVSRKMMGRVTPDAFTVSSMIKGYCKKGDMEEALSVFTEFKDKN 825
Query: 184 IQVDEITYSTLIDGLCRRGDFDRVFLLLEEM 276
I D + LI G C +G + LL EM
Sbjct: 826 ISADFFGFLFLIKGFCTKGRMEEARGLLREM 856