BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039453
         (403 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278558.1| PREDICTED: pentatricopeptide repeat-containi...    59   2e-15
emb|CBI22241.3| unnamed protein product [Vitis vinifera]               59   2e-15
ref|XP_002871658.1| pentatricopeptide repeat-containing protein ...    44   2e-07
ref|XP_003562027.1| PREDICTED: pentatricopeptide repeat-containi...    44   4e-07
ref|XP_002533116.1| pentatricopeptide repeat-containing protein,...    47   2e-06

>ref|XP_002278558.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15280-like [Vitis vinifera]
          Length = 1273

 Score = 58.5 bits (140), Expect(2) = 2e-15
 Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
 Frame = -2

Query: 378 HCNEKQNLVSCSRDKINKPLEDFSSVKHVNIARSVILRCSYLWEKKD-ETYEEVRFKDIL 202
           H ++  +  S + + I K   D S++    I +SVILRCS+LWE    + +     K+ L
Sbjct: 59  HSSQSSSSSSVNEEAI-KTHVDLSAIDCSRIVKSVILRCSHLWETNSVKPFGYSSLKEHL 117

Query: 201 LKLSNISPALIRRFWRVSTLKPDDVLK 121
           L +S+ISP   R+F RVS LKP+DVL+
Sbjct: 118 LGISDISPETTRKFRRVSELKPEDVLE 144



 Score = 48.5 bits (114), Expect(2) = 2e-15
 Identities = 21/41 (51%), Positives = 28/41 (68%)
 Frame = -1

Query: 124 EILLGFEFDSGNVENEASKVGLLWKLFNWAGKQCEGFEHLP 2
           EILLGF+F   N + E+ KV  LW +F W+  Q +GF+HLP
Sbjct: 144 EILLGFQFHRENPQIESGKVESLWGIFKWSNDQNKGFKHLP 184


>emb|CBI22241.3| unnamed protein product [Vitis vinifera]
          Length = 1256

 Score = 58.5 bits (140), Expect(2) = 2e-15
 Identities = 35/87 (40%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
 Frame = -2

Query: 378 HCNEKQNLVSCSRDKINKPLEDFSSVKHVNIARSVILRCSYLWEKKD-ETYEEVRFKDIL 202
           H ++  +  S + + I K   D S++    I +SVILRCS+LWE    + +     K+ L
Sbjct: 42  HSSQSSSSSSVNEEAI-KTHVDLSAIDCSRIVKSVILRCSHLWETNSVKPFGYSSLKEHL 100

Query: 201 LKLSNISPALIRRFWRVSTLKPDDVLK 121
           L +S+ISP   R+F RVS LKP+DVL+
Sbjct: 101 LGISDISPETTRKFRRVSELKPEDVLE 127



 Score = 48.5 bits (114), Expect(2) = 2e-15
 Identities = 21/41 (51%), Positives = 28/41 (68%)
 Frame = -1

Query: 124 EILLGFEFDSGNVENEASKVGLLWKLFNWAGKQCEGFEHLP 2
           EILLGF+F   N + E+ KV  LW +F W+  Q +GF+HLP
Sbjct: 127 EILLGFQFHRENPQIESGKVESLWGIFKWSNDQNKGFKHLP 167


>ref|XP_002871658.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297317495|gb|EFH47917.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 1223

 Score = 43.9 bits (102), Expect(2) = 2e-07
 Identities = 19/41 (46%), Positives = 27/41 (65%)
 Frame = -1

Query: 124 EILLGFEFDSGNVENEASKVGLLWKLFNWAGKQCEGFEHLP 2
           E+LLGFE +       ++KV  LW++F WA  Q +GF+HLP
Sbjct: 103 ELLLGFESELQRGRIGSTKVQALWEIFRWASGQYQGFKHLP 143



 Score = 35.8 bits (81), Expect(2) = 2e-07
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = -2

Query: 249 EKKDETYEEVRFKDILLKLSNISPALIRRFWRVSTLKPDDVLK 121
           EK D T   +  KD+LL LS++ P +IRRF R   LKP++V++
Sbjct: 63  EKLDLTGSSL--KDLLLDLSDVIPNIIRRFRRFPGLKPENVVE 103


>ref|XP_003562027.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15280-like, partial [Brachypodium distachyon]
          Length = 1278

 Score = 43.9 bits (102), Expect(2) = 4e-07
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = -2

Query: 288 IARSVILRCSYLWEKKDETYE-EVRFKDILLKLSNISPALIRRFWRVSTLKPDD 130
           I   +I +CS ++E   +T+E      D+L     +SP  +RRFWR STLKP+D
Sbjct: 94  IGELIIAKCSSIFESGRDTFEGNCSLHDLLKPGLWLSPETLRRFWRASTLKPED 147



 Score = 34.7 bits (78), Expect(2) = 4e-07
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -1

Query: 124 EILLGFEFDSGNVENEASKVGLLWKLFNWAGKQCEGFEHLP 2
           +IL+GF    G    E  K   LW L+ WA  Q + F HLP
Sbjct: 150 DILIGF----GQGAAEIRKARFLWNLYRWASWQSKDFRHLP 186


>ref|XP_002533116.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223527079|gb|EEF29261.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1204

 Score = 47.4 bits (111), Expect(2) = 2e-06
 Identities = 21/41 (51%), Positives = 27/41 (65%)
 Frame = -1

Query: 124 EILLGFEFDSGNVENEASKVGLLWKLFNWAGKQCEGFEHLP 2
           EILLGF+F    V  ++SKV  LW +F W   Q +GF+HLP
Sbjct: 65  EILLGFQFQCEQVAIKSSKVESLWGIFKWVSDQDKGFKHLP 105



 Score = 29.3 bits (64), Expect(2) = 2e-06
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = -2

Query: 195 LSNISPALIRRFWRVSTLKPDDVLK 121
           +S++ P L RRF R+  L+P+DVL+
Sbjct: 41  ISDVIPDLTRRFSRILRLRPEDVLE 65