BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039448
         (287 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002325452.1| predicted protein [Populus trichocarpa] gi|2...   120   2e-25
ref|XP_002524030.1| pentatricopeptide repeat-containing protein,...   113   1e-23
ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containi...   112   4e-23
ref|XP_003637626.1| Pentatricopeptide repeat-containing protein ...   112   4e-23
ref|XP_003637381.1| Pentatricopeptide repeat-containing protein ...   112   4e-23

>ref|XP_002325452.1| predicted protein [Populus trichocarpa] gi|222862327|gb|EEE99833.1|
           predicted protein [Populus trichocarpa]
          Length = 864

 Score =  120 bits (300), Expect = 2e-25
 Identities = 54/89 (60%), Positives = 72/89 (80%), Gaps = 2/89 (2%)
 Frame = +2

Query: 26  WNQLLHRFNTCGLVSQVWVVYVEMLTCRVIPNVFTYNVLMHSLCKVGSLNSALDLLRNCD 205
           WN+L+++FN  GLVSQVW +Y EML+C V+PNVFT+N+L+H+ CK+G L+ ALDL+RN D
Sbjct: 14  WNRLIYQFNATGLVSQVWDLYSEMLSCGVLPNVFTHNILVHAWCKMGHLSLALDLIRNVD 73

Query: 206 I--DTVSYNTVIYGFCKQGLVQEAVGLLS 286
           I  DTV+YNT I+GFC+QGL  +  G LS
Sbjct: 74  IDVDTVTYNTAIWGFCQQGLANQGFGFLS 102


>ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223536757|gb|EEF38398.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 1016

 Score =  113 bits (283), Expect = 1e-23
 Identities = 56/92 (60%), Positives = 70/92 (76%), Gaps = 2/92 (2%)
 Frame = +2

Query: 17  LYTWNQLLHRFNTCGLVSQVWVVYVEMLTCRVIPNVFTYNVLMHSLCKVGSLNSALDLLR 196
           L  WNQL++ FN  GLVSQV  +Y EML   V PNV+T+NVL+H+ CK+G+L  ALDLLR
Sbjct: 10  LLLWNQLIYHFNAFGLVSQVCDIYTEMLCSAVPPNVYTHNVLVHAWCKMGNLILALDLLR 69

Query: 197 NCD--IDTVSYNTVIYGFCKQGLVQEAVGLLS 286
           N D  +DTV+YNTVI+GFC+ GLV +A G LS
Sbjct: 70  NVDVEVDTVTYNTVIWGFCQHGLVNQAFGFLS 101


>ref|XP_003528450.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14770,
           mitochondrial-like [Glycine max]
          Length = 1012

 Score =  112 bits (279), Expect = 4e-23
 Identities = 53/91 (58%), Positives = 66/91 (72%)
 Frame = +2

Query: 14  NLYTWNQLLHRFNTCGLVSQVWVVYVEMLTCRVIPNVFTYNVLMHSLCKVGSLNSALDLL 193
           +L  WN LL+ FN  G VSQV V+Y EM+ C V+PNVF+ N+L+HSLCKVG L  AL  L
Sbjct: 9   SLPLWNDLLYEFNASGFVSQVKVLYSEMVLCGVVPNVFSVNLLVHSLCKVGDLGLALGYL 68

Query: 194 RNCDIDTVSYNTVIYGFCKQGLVQEAVGLLS 286
           RN   D V+YNTV++GFCK+GL  +  GLLS
Sbjct: 69  RNSVFDHVTYNTVVWGFCKRGLADQGFGLLS 99


>ref|XP_003637626.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355503561|gb|AES84764.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 989

 Score =  112 bits (279), Expect = 4e-23
 Identities = 55/90 (61%), Positives = 70/90 (77%), Gaps = 3/90 (3%)
 Frame = +2

Query: 26  WNQLLHRFNTCGLVSQVWVVYVEMLTCRVIPNVFTYNVLMHSLCKVGSLNSALDLLRN-- 199
           WN LL++FN  GLVSQV ++Y +ML C V+P+VF+ NVL+HSLCKVG L+ AL  LRN  
Sbjct: 97  WNTLLYQFNASGLVSQVKLMYSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLALGYLRNND 156

Query: 200 -CDIDTVSYNTVIYGFCKQGLVQEAVGLLS 286
             DID V+YNTVI+GFC++GLV +  GLLS
Sbjct: 157 VVDIDNVTYNTVIWGFCQKGLVDQGFGLLS 186


>ref|XP_003637381.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355503316|gb|AES84519.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 1023

 Score =  112 bits (279), Expect = 4e-23
 Identities = 55/90 (61%), Positives = 70/90 (77%), Gaps = 3/90 (3%)
 Frame = +2

Query: 26  WNQLLHRFNTCGLVSQVWVVYVEMLTCRVIPNVFTYNVLMHSLCKVGSLNSALDLLRN-- 199
           WN LL++FN  GLVSQV ++Y +ML C V+P+VF+ NVL+HSLCKVG L+ AL  LRN  
Sbjct: 97  WNTLLYQFNASGLVSQVKLMYSDMLFCGVVPDVFSVNVLVHSLCKVGDLDLALGYLRNND 156

Query: 200 -CDIDTVSYNTVIYGFCKQGLVQEAVGLLS 286
             DID V+YNTVI+GFC++GLV +  GLLS
Sbjct: 157 VVDIDNVTYNTVIWGFCQKGLVDQGFGLLS 186