BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039434
         (340 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD30632.1|AC006085_5 Hypothetical protein [Arabidopsis thali...   103   1e-20
gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]             102   4e-20
gb|AAY99339.1| pol-polyprotein [Silene latifolia]                     101   7e-20
gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]             100   1e-19
gb|AAD22505.1| putative retroelement gag/pol polyprotein [Arabid...    98   6e-19

>gb|AAD30632.1|AC006085_5 Hypothetical protein [Arabidopsis thaliana]
          Length = 1295

 Score =  103 bits (257), Expect = 1e-20
 Identities = 50/109 (45%), Positives = 80/109 (73%), Gaps = 1/109 (0%)
 Frame = -3

Query: 338  SSVLVRLVDIIEKPVYFQSKTLLDAETQYSRIERYALALIFSALKLKPYFESHSVVVVTN 159
            SSVLVR+    E+P+++ SK+  DAET+Y  +E+ ALA++ SA KL+PYF+SH +VV+T+
Sbjct: 802  SSVLVRVERSDERPIFYVSKSFSDAETRYPMMEKLALAVVTSARKLRPYFQSHPIVVLTS 861

Query: 158  LPPK*ALRT-EKSGRMLKWAVMFSSYEIQYQIRTAEKAQAVAKFLAEFP 15
            LP +  L +  +SGR+ KWA+  S ++++++ RT+ K+Q +A FL E P
Sbjct: 862  LPLRAILHSPSQSGRLAKWAIELSEFDLEFRARTSLKSQVLADFLIELP 910


>gb|AAF79618.1|AC027665_19 F5M15.26 [Arabidopsis thaliana]
          Length = 1838

 Score =  102 bits (253), Expect = 4e-20
 Identities = 53/111 (47%), Positives = 80/111 (72%), Gaps = 1/111 (0%)
 Frame = -3

Query: 338  SSVLVRLVDIIEKPVYFQSKTLLDAETQYSRIERYALALIFSALKLKPYFESHSVVVVTN 159
            SSVLVR     ++P+++ SK+L++AET+Y  IE+ ALA++ SA KL+PYF+SH++ V+T+
Sbjct: 1133 SSVLVREDRGEQRPIFYTSKSLVEAETRYPVIEKAALAVVTSARKLRPYFQSHTIAVLTD 1192

Query: 158  LPPK*ALRT-EKSGRMLKWAVMFSSYEIQYQIRTAEKAQAVAKFLAEFPAE 9
             P + AL +  +SGRM KWAV  S Y+I ++ R A K+Q +A FL E P +
Sbjct: 1193 QPLRVALHSPSQSGRMTKWAVELSEYDIDFRPRPAMKSQVLADFLIELPLQ 1243


>gb|AAY99339.1| pol-polyprotein [Silene latifolia]
          Length = 1307

 Score =  101 bits (251), Expect = 7e-20
 Identities = 55/107 (51%), Positives = 74/107 (69%), Gaps = 1/107 (0%)
 Frame = -3

Query: 338 SSVLVRLVDIIEKPVYFQSKTLLDAETQYSRIERYALALIFSALKLKPYFESHSVVVVTN 159
           S+V++R  D  + P+YF S TLL AET Y  IE+ A A++ +A KLKPYF +H V V+T+
Sbjct: 619 SAVIIREEDKQQHPIYFISHTLLAAETNYPLIEKAAFAVVVAARKLKPYFNAHPVTVLTD 678

Query: 158 LPPK*ALRT-EKSGRMLKWAVMFSSYEIQYQIRTAEKAQAVAKFLAE 21
            P + AL   EKSGR++KWAV  S + IQY+ R + K QA+A FLAE
Sbjct: 679 QPLEKALENFEKSGRLIKWAVELSGFGIQYKPRPSIKGQALADFLAE 725


>gb|ABW81060.1| GagPol3 [Arabidopsis lyrata subsp. lyrata]
          Length = 1103

 Score =  100 bits (249), Expect = 1e-19
 Identities = 52/109 (47%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
 Frame = -3

Query: 338 SSVLVRLVDIIEKPVYFQSKTLLDAETQYSRIERYALALIFSALKLKPYFESHSVVVVTN 159
           S VLVR     +KP+Y+ SK++ D ET+Y+ +E+ ALA++ SA KL+PYF+SH V V+TN
Sbjct: 330 SGVLVREDRGEQKPIYYVSKSMTDPETRYTMMEKLALAVVTSARKLRPYFQSHPVQVLTN 389

Query: 158 LPPK*ALRT-EKSGRMLKWAVMFSSYEIQYQIRTAEKAQAVAKFLAEFP 15
            P +  L +  +SGR+ KWAV  S Y+I+++ R + KAQ +A FL E P
Sbjct: 390 QPLRTILHSPSQSGRLAKWAVELSEYDIEFKSRISMKAQVLADFLTELP 438


>gb|AAD22505.1| putative retroelement gag/pol polyprotein [Arabidopsis thaliana]
          Length = 1212

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 47/109 (43%), Positives = 76/109 (69%), Gaps = 1/109 (0%)
 Frame = -3

Query: 338 SSVLVRLVDIIEKPVYFQSKTLLDAETQYSRIERYALALIFSALKLKPYFESHSVVVVTN 159
           S VLVR+    E+P+++ SK+  D ET+Y  +E+ ALA++ +A KL+PYF+SH +VV+T+
Sbjct: 630 SGVLVRVERSDERPIFYVSKSFSDVETRYPMMEKLALAVVTAARKLRPYFQSHPIVVLTS 689

Query: 158 LPPK*ALRT-EKSGRMLKWAVMFSSYEIQYQIRTAEKAQAVAKFLAEFP 15
           LP +  L +  +SGR+ KWA+  S + +++  RT+ K+Q +A FL E P
Sbjct: 690 LPLRTILHSPNQSGRLAKWAIELSEFNLEFHARTSLKSQVLADFLIELP 738