BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039350
         (286 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002871294.1| mitochondrial transcription termination fact...    61   8e-08
ref|NP_568185.1| Mitochondrial transcription termination factor ...    61   1e-07
ref|XP_002321027.1| predicted protein [Populus trichocarpa] gi|2...    57   2e-06
ref|XP_002520663.1| conserved hypothetical protein [Ricinus comm...    56   4e-06
ref|XP_003551920.1| PREDICTED: uncharacterized protein LOC100813...    55   6e-06

>ref|XP_002871294.1| mitochondrial transcription termination factor family protein
           [Arabidopsis lyrata subsp. lyrata]
           gi|297317131|gb|EFH47553.1| mitochondrial transcription
           termination factor family protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 404

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 40/90 (44%), Positives = 57/90 (63%)
 Frame = -1

Query: 271 HPPLVLTLDPLLFSENPYLVNKMGLHPLLFSENPMPLKYSLEKRIILRLSVIQLLVSNGL 92
           HP  ++  +  +     + VN+M L P   +E P+ L +SLEKRII R SV ++LVSNGL
Sbjct: 302 HPHCMMLSERKINRTMEFFVNEMNLAPRSIAECPVVLFFSLEKRIIPRCSVTKVLVSNGL 361

Query: 91  VREDYKVSTSLLM*PSLKINFLRSYVTKFE 2
           V+ED+ + TSLL+ P  K+ FL   V K+E
Sbjct: 362 VKEDWSL-TSLLV-PVEKV-FLEKLVIKYE 388


>ref|NP_568185.1| Mitochondrial transcription termination factor family protein
           [Arabidopsis thaliana]
           gi|13878065|gb|AAK44110.1|AF370295_1 unknown protein
           [Arabidopsis thaliana] gi|6562304|emb|CAB62602.1|
           putative protein [Arabidopsis thaliana]
           gi|10176724|dbj|BAB09954.1| unnamed protein product
           [Arabidopsis thaliana] gi|17104655|gb|AAL34216.1|
           unknown protein [Arabidopsis thaliana]
           gi|21592327|gb|AAM64278.1| unknown [Arabidopsis
           thaliana] gi|332003836|gb|AED91219.1| Mitochondrial
           transcription termination factor family protein
           [Arabidopsis thaliana]
          Length = 405

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 39/90 (43%), Positives = 57/90 (63%)
 Frame = -1

Query: 271 HPPLVLTLDPLLFSENPYLVNKMGLHPLLFSENPMPLKYSLEKRIILRLSVIQLLVSNGL 92
           HP  ++  +  +     Y VN+M + P   ++ P+ L +SLEKRII R SV ++LVSNGL
Sbjct: 303 HPHCMMLSERKINRTMEYFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGL 362

Query: 91  VREDYKVSTSLLM*PSLKINFLRSYVTKFE 2
           V+ED+ + TSLL+ P  K+ FL   V K+E
Sbjct: 363 VKEDWSL-TSLLV-PVEKV-FLEKLVIKYE 389


>ref|XP_002321027.1| predicted protein [Populus trichocarpa] gi|222861800|gb|EEE99342.1|
           predicted protein [Populus trichocarpa]
          Length = 400

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 36/92 (39%), Positives = 51/92 (55%)
 Frame = -1

Query: 277 RLHPPLVLTLDPLLFSENPYLVNKMGLHPLLFSENPMPLKYSLEKRIILRLSVIQLLVSN 98
           R HP  ++  +  +     + VNKMG         P+ L  SLEKRII R  VIQ+L S 
Sbjct: 293 RKHPHCMMLSEKKIMKGLDFFVNKMGWPSKEIVHCPVILFLSLEKRIIPRCKVIQVLWSK 352

Query: 97  GLVREDYKVSTSLLM*PSLKINFLRSYVTKFE 2
           GL+++D  ++T LL    ++  FL  +VTKFE
Sbjct: 353 GLIKKDISLNTVLL---PVEKRFLERFVTKFE 381


>ref|XP_002520663.1| conserved hypothetical protein [Ricinus communis]
           gi|223540048|gb|EEF41625.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 377

 Score = 55.8 bits (133), Expect = 4e-06
 Identities = 33/90 (36%), Positives = 56/90 (62%)
 Frame = -1

Query: 271 HPPLVLTLDPLLFSENPYLVNKMGLHPLLFSENPMPLKYSLEKRIILRLSVIQLLVSNGL 92
           HP  ++  +  +     + VNKMGL   + ++ P+ L +SLEKRI+ R  VI++L++ GL
Sbjct: 271 HPHCMMLSEKKIMLAMDFFVNKMGLPSKVIAQCPVLLFFSLEKRIVPRCRVIRVLMNKGL 330

Query: 91  VREDYKVSTSLLM*PSLKINFLRSYVTKFE 2
           V++D  ++T L+  P+ K  FL  +V K+E
Sbjct: 331 VKKDVSLATVLV--PTEKC-FLDRFVIKYE 357


>ref|XP_003551920.1| PREDICTED: uncharacterized protein LOC100813396 [Glycine max]
          Length = 393

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 32/90 (35%), Positives = 52/90 (57%)
 Frame = -1

Query: 271 HPPLVLTLDPLLFSENPYLVNKMGLHPLLFSENPMPLKYSLEKRIILRLSVIQLLVSNGL 92
           +P  +   D ++  +  +LV  MGL P   +  P  L Y+LEKRI+ RLSVI++L S GL
Sbjct: 287 YPNFIKLSDEMVTKKMNFLVKDMGLSPEYIAAYPTVLGYNLEKRIVPRLSVIKILKSKGL 346

Query: 91  VREDYKVSTSLLM*PSLKINFLRSYVTKFE 2
           V+ + + S+ L +   +   FL+ +V  F+
Sbjct: 347 VKNNLQSSSFLCITEEI---FLKKFVINFQ 373