BLASTX nr result
ID: Coptis25_contig00039341
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00039341
(414 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002532248.1| pentatricopeptide repeat-containing protein,... 177 6e-43
emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera] 173 1e-41
ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containi... 172 2e-41
ref|NP_001046823.2| Os02g0468500 [Oryza sativa Japonica Group] g... 160 1e-37
gb|EAY85797.1| hypothetical protein OsI_07159 [Oryza sativa Indi... 160 1e-37
>ref|XP_002532248.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528066|gb|EEF30142.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 521
Score = 177 bits (450), Expect = 6e-43
Identities = 89/138 (64%), Positives = 108/138 (78%), Gaps = 1/138 (0%)
Frame = -3
Query: 412 SRLEIDAVCYTTLISCLCKGGRIDEAINMLKEM-EKVCKVDLVTFNVLFKGLCFDKRFDE 236
S L+ D V YTTLI+C C GRIDEA+ +LKEM E CK D VTFNVL KGLC + RFDE
Sbjct: 335 SGLKPDTVGYTTLINCFCGVGRIDEAMELLKEMTEMKCKADAVTFNVLLKGLCREGRFDE 394
Query: 235 AIGMLERLPYEGVYLNKASYRVVLNFLLKEKEIERAVYVLGLMLGRGFVPHFATSNEVLI 56
A+ MLE L YEGVYLNK SYR+VLNFL ++ E+E++ +LGLML RGFVPH+ATSNE+L+
Sbjct: 395 ALRMLENLAYEGVYLNKGSYRIVLNFLCQKGELEKSCALLGLMLSRGFVPHYATSNELLV 454
Query: 55 SFCEAGKVEDATTALYSL 2
CEAG V++A TAL+ L
Sbjct: 455 CLCEAGMVDNAVTALFGL 472
Score = 70.1 bits (170), Expect = 2e-10
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 2/131 (1%)
Frame = -3
Query: 397 DAVCYTTLISCLCKGGRIDEAINMLKEMEKVCKV--DLVTFNVLFKGLCFDKRFDEAIGM 224
+ + Y+TLI LC GR+ EAI + +EM ++ D +T++VL KG C + D A +
Sbjct: 234 NVITYSTLIDGLCGNGRLKEAIELFEEMVSKDQILPDALTYSVLIKGFCHGGKADRARKI 293
Query: 223 LERLPYEGVYLNKASYRVVLNFLLKEKEIERAVYVLGLMLGRGFVPHFATSNEVLISFCE 44
+E + G N +Y V++N KE +E A V M G P ++ FC
Sbjct: 294 MEFMRSNGCDPNVFNYSVLMNGFCKEGRLEEAKEVFDEMKSSGLKPDTVGYTTLINCFCG 353
Query: 43 AGKVEDATTAL 11
G++++A L
Sbjct: 354 VGRIDEAMELL 364
>emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 173 bits (439), Expect = 1e-41
Identities = 85/136 (62%), Positives = 106/136 (77%), Gaps = 1/136 (0%)
Frame = -3
Query: 406 LEIDAVCYTTLISCLCKGGRIDEAINMLKEM-EKVCKVDLVTFNVLFKGLCFDKRFDEAI 230
L+ D V YTTLI+ C+ GR+DEA+ +LK+M E C+ D VTFNV+ GLC + RF+EA
Sbjct: 381 LKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAX 440
Query: 229 GMLERLPYEGVYLNKASYRVVLNFLLKEKEIERAVYVLGLMLGRGFVPHFATSNEVLISF 50
GMLERLPYEGVYLNKASYR+VLN L +E E+++A ++GLMLGRG +PHFATSNE+L+
Sbjct: 441 GMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHL 500
Query: 49 CEAGKVEDATTALYSL 2
CEAGKV DA AL L
Sbjct: 501 CEAGKVGDAVMALLGL 516
Score = 72.4 bits (176), Expect = 4e-11
Identities = 41/129 (31%), Positives = 65/129 (50%), Gaps = 2/129 (1%)
Frame = -3
Query: 391 VCYTTLISCLCKGGRIDEAINMLKEMEKVCKV--DLVTFNVLFKGLCFDKRFDEAIGMLE 218
+ Y+TLI+ LC GR+ EAI + +EM ++ D +T+N L G C + D A+ ++E
Sbjct: 280 ITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGXKVDRALKIME 339
Query: 217 RLPYEGVYLNKASYRVVLNFLLKEKEIERAVYVLGLMLGRGFVPHFATSNEVLISFCEAG 38
+ G N +Y ++N KE +E A V M G P ++ FC AG
Sbjct: 340 FMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAG 399
Query: 37 KVEDATTAL 11
+V++A L
Sbjct: 400 RVDEAMELL 408
Score = 60.1 bits (144), Expect = 2e-07
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 1/133 (0%)
Frame = -3
Query: 397 DAVCYTTLISCLCKGGRIDEAINMLKEMEKV-CKVDLVTFNVLFKGLCFDKRFDEAIGML 221
DA+ Y LI+ C G ++D A+ +++ M+K C ++ ++ L G C + R +EA +
Sbjct: 314 DALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVF 373
Query: 220 ERLPYEGVYLNKASYRVVLNFLLKEKEIERAVYVLGLMLGRGFVPHFATSNEVLISFCEA 41
+ + G+ + Y ++NF + ++ A+ +L M T N +L C
Sbjct: 374 DEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCRE 433
Query: 40 GKVEDATTALYSL 2
G+ E+A L L
Sbjct: 434 GRFEEAXGMLERL 446
Score = 58.9 bits (141), Expect = 4e-07
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 3/119 (2%)
Frame = -3
Query: 370 SCLCKGGRIDEAINMLKEMEK--VCKVDLVTFNVLFKGLCFDKRFDEAIGMLERLPYEGV 197
S K G ID A +++EM+K V +L+T++ L GLC R EAI + E + +
Sbjct: 251 SITAKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVSKDQ 310
Query: 196 YLNKA-SYRVVLNFLLKEKEIERAVYVLGLMLGRGFVPHFATSNEVLISFCEAGKVEDA 23
L A +Y ++N +++RA+ ++ M G P+ + ++ FC+ G++E+A
Sbjct: 311 ILPDALTYNALINGFCHGXKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEA 369
>ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 172 bits (437), Expect = 2e-41
Identities = 85/136 (62%), Positives = 106/136 (77%), Gaps = 1/136 (0%)
Frame = -3
Query: 406 LEIDAVCYTTLISCLCKGGRIDEAINMLKEM-EKVCKVDLVTFNVLFKGLCFDKRFDEAI 230
L+ D V YTTLI+ C+ GR+DEA+ +LK+M E C+ D VTFNV+ GLC + RF+EA
Sbjct: 338 LKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEAR 397
Query: 229 GMLERLPYEGVYLNKASYRVVLNFLLKEKEIERAVYVLGLMLGRGFVPHFATSNEVLISF 50
GMLERLPYEGVYLNKASYR+VLN L +E E+++A ++GLMLGRG +PHFATSNE+L+
Sbjct: 398 GMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHL 457
Query: 49 CEAGKVEDATTALYSL 2
CEAGKV DA AL L
Sbjct: 458 CEAGKVGDAVMALLGL 473
Score = 73.2 bits (178), Expect = 2e-11
Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 2/129 (1%)
Frame = -3
Query: 391 VCYTTLISCLCKGGRIDEAINMLKEMEKVCKV--DLVTFNVLFKGLCFDKRFDEAIGMLE 218
+ Y+TLI+ LC GR+ EAI + +EM ++ D +T+N L G C ++ D A+ ++E
Sbjct: 237 ITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIME 296
Query: 217 RLPYEGVYLNKASYRVVLNFLLKEKEIERAVYVLGLMLGRGFVPHFATSNEVLISFCEAG 38
+ G N +Y ++N KE +E A V M G P ++ FC AG
Sbjct: 297 FMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAG 356
Query: 37 KVEDATTAL 11
+V++A L
Sbjct: 357 RVDEAMELL 365
Score = 65.5 bits (158), Expect = 4e-09
Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 3/131 (2%)
Frame = -3
Query: 406 LEIDAVCYTTLISCLCKGGRIDEAINMLKEMEK--VCKVDLVTFNVLFKGLCFDKRFDEA 233
LE + + L+ CK G ID A +++EM+K V +L+T++ L GLC R EA
Sbjct: 196 LEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEA 255
Query: 232 IGMLERLPYEGVYLNKA-SYRVVLNFLLKEKEIERAVYVLGLMLGRGFVPHFATSNEVLI 56
I + E + + L A +Y ++N ++++RA+ ++ M G P+ + ++
Sbjct: 256 IELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMN 315
Query: 55 SFCEAGKVEDA 23
FC+ G++E+A
Sbjct: 316 GFCKEGRLEEA 326
>ref|NP_001046823.2| Os02g0468500 [Oryza sativa Japonica Group]
gi|47497324|dbj|BAD19365.1| fertility restorer homologue
A-like [Oryza sativa Japonica Group]
gi|125582052|gb|EAZ22983.1| hypothetical protein
OsJ_06677 [Oryza sativa Japonica Group]
gi|255670892|dbj|BAF08737.2| Os02g0468500 [Oryza sativa
Japonica Group]
Length = 506
Score = 160 bits (404), Expect = 1e-37
Identities = 76/138 (55%), Positives = 104/138 (75%), Gaps = 1/138 (0%)
Frame = -3
Query: 412 SRLEIDAVCYTTLISCLCKGGRIDEAINMLKEM-EKVCKVDLVTFNVLFKGLCFDKRFDE 236
S ++ DAV YT+L+ CLC+ G +DE IN+++EM +K CK D+VT+N+L +GLC D+R E
Sbjct: 330 SGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQKGCKADVVTYNLLLEGLCKDRRIAE 389
Query: 235 AIGMLERLPYEGVYLNKASYRVVLNFLLKEKEIERAVYVLGLMLGRGFVPHFATSNEVLI 56
A+ +LE+LP EGV LN ASYR+V+N L E+E+A +LG+MLGRGFVPH+A SN +LI
Sbjct: 390 AVTLLEKLPSEGVQLNVASYRIVMNCLCSCGEMEKAAGLLGMMLGRGFVPHYAASNMLLI 449
Query: 55 SFCEAGKVEDATTALYSL 2
C+ G+V DAT LY L
Sbjct: 450 GLCDVGRVSDATVTLYGL 467
>gb|EAY85797.1| hypothetical protein OsI_07159 [Oryza sativa Indica Group]
Length = 506
Score = 160 bits (404), Expect = 1e-37
Identities = 76/138 (55%), Positives = 104/138 (75%), Gaps = 1/138 (0%)
Frame = -3
Query: 412 SRLEIDAVCYTTLISCLCKGGRIDEAINMLKEM-EKVCKVDLVTFNVLFKGLCFDKRFDE 236
S ++ DAV YT+L+ CLC+ G +DE IN+++EM +K CK D+VT+N+L +GLC D+R E
Sbjct: 330 SGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQKGCKADVVTYNLLLEGLCKDRRIAE 389
Query: 235 AIGMLERLPYEGVYLNKASYRVVLNFLLKEKEIERAVYVLGLMLGRGFVPHFATSNEVLI 56
A+ +LE+LP EGV LN ASYR+V+N L E+E+A +LG+MLGRGFVPH+A SN +LI
Sbjct: 390 AVTLLEKLPSEGVQLNVASYRIVMNCLCSCGEMEKAAGLLGMMLGRGFVPHYAASNMLLI 449
Query: 55 SFCEAGKVEDATTALYSL 2
C+ G+V DAT LY L
Sbjct: 450 GLCDVGRVSDATVTLYGL 467