BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039330
         (526 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI36552.3| unnamed protein product [Vitis vinifera]              273   1e-71
ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containi...   273   1e-71
ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   266   1e-69
ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containi...   266   1e-69
ref|XP_002867333.1| pentatricopeptide repeat-containing protein ...   262   2e-68

>emb|CBI36552.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  273 bits (698), Expect = 1e-71
 Identities = 132/165 (80%), Positives = 146/165 (88%)
 Frame = -1

Query: 526  LLSNIYSADQNYPAAAVVRQTVRKKKLVKTPGCTLIELGETLYIFTSGDKSNPQSVAIYA 347
            LLSNIYSA QNYP AA VR  V+++KL KTPGCTLIE+  TL+IFTSGD+S+PQ+ AIYA
Sbjct: 562  LLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYA 621

Query: 346  ELEKLTAKMREAGFKAETEMAFHDVEEEEKEQMVNVHSEKLAIAFALINTKPGTEIKIIK 167
             LEKLT KMREAGF+ ET  A HDVEEEEKE MV VHSEKLAIAF LI ++PGTEI+IIK
Sbjct: 622  MLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIK 681

Query: 166  NLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGVCSCGDFW 32
            NLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDG+CSCGD+W
Sbjct: 682  NLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 726


>ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
            [Vitis vinifera]
          Length = 781

 Score =  273 bits (698), Expect = 1e-71
 Identities = 132/165 (80%), Positives = 146/165 (88%)
 Frame = -1

Query: 526  LLSNIYSADQNYPAAAVVRQTVRKKKLVKTPGCTLIELGETLYIFTSGDKSNPQSVAIYA 347
            LLSNIYSA QNYP AA VR  V+++KL KTPGCTLIE+  TL+IFTSGD+S+PQ+ AIYA
Sbjct: 617  LLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTLIEVANTLHIFTSGDQSHPQATAIYA 676

Query: 346  ELEKLTAKMREAGFKAETEMAFHDVEEEEKEQMVNVHSEKLAIAFALINTKPGTEIKIIK 167
             LEKLT KMREAGF+ ET  A HDVEEEEKE MV VHSEKLAIAF LI ++PGTEI+IIK
Sbjct: 677  MLEKLTGKMREAGFQTETGTALHDVEEEEKELMVKVHSEKLAIAFGLITSEPGTEIRIIK 736

Query: 166  NLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGVCSCGDFW 32
            NLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDG+CSCGD+W
Sbjct: 737  NLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGICSCGDYW 781


>ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  266 bits (680), Expect = 1e-69
 Identities = 128/166 (77%), Positives = 147/166 (88%), Gaps = 1/166 (0%)
 Frame = -1

Query: 526  LLSNIYSADQNYPAAAVVRQTVRKKKLVKTPGCTLIELGETLYIFTSGDKSNPQSVAIYA 347
            LLSNIYS D+N+P AA VRQ V+K+KL KTPGCTLIE+ +  Y+FTSGD+S+PQ+ AI+ 
Sbjct: 623  LLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFE 682

Query: 346  ELEKLTAKMREAGFKAET-EMAFHDVEEEEKEQMVNVHSEKLAIAFALINTKPGTEIKII 170
             LEKLT KMREAG++AET   A HDVE+EEKE MVNVHSEKLAIAF LI+TKPGTEI+II
Sbjct: 683  MLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRII 742

Query: 169  KNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGVCSCGDFW 32
            KNLRVCLDCH ATKFISKITERVIVVRDANRFHHFK+G+CSCGD+W
Sbjct: 743  KNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788


>ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700-like
            [Cucumis sativus]
          Length = 788

 Score =  266 bits (680), Expect = 1e-69
 Identities = 128/166 (77%), Positives = 147/166 (88%), Gaps = 1/166 (0%)
 Frame = -1

Query: 526  LLSNIYSADQNYPAAAVVRQTVRKKKLVKTPGCTLIELGETLYIFTSGDKSNPQSVAIYA 347
            LLSNIYS D+N+P AA VRQ V+K+KL KTPGCTLIE+ +  Y+FTSGD+S+PQ+ AI+ 
Sbjct: 623  LLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIEIDDQQYVFTSGDRSHPQATAIFE 682

Query: 346  ELEKLTAKMREAGFKAET-EMAFHDVEEEEKEQMVNVHSEKLAIAFALINTKPGTEIKII 170
             LEKLT KMREAG++AET   A HDVE+EEKE MVNVHSEKLAIAF LI+TKPGTEI+II
Sbjct: 683  MLEKLTGKMREAGYQAETVTTALHDVEDEEKELMVNVHSEKLAIAFGLISTKPGTEIRII 742

Query: 169  KNLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGVCSCGDFW 32
            KNLRVCLDCH ATKFISKITERVIVVRDANRFHHFK+G+CSCGD+W
Sbjct: 743  KNLRVCLDCHTATKFISKITERVIVVRDANRFHHFKNGICSCGDYW 788


>ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297313169|gb|EFH43592.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 792

 Score =  262 bits (670), Expect = 2e-68
 Identities = 126/165 (76%), Positives = 145/165 (87%)
 Frame = -1

Query: 526  LLSNIYSADQNYPAAAVVRQTVRKKKLVKTPGCTLIELGETLYIFTSGDKSNPQSVAIYA 347
            LLSNI+SAD+NYP AA VRQT +K+KL K PG TLIE+GET ++FTSGD+S+PQ  AI+ 
Sbjct: 628  LLSNIHSADRNYPQAATVRQTAKKRKLAKAPGYTLIEIGETPHVFTSGDQSHPQVKAIHE 687

Query: 346  ELEKLTAKMREAGFKAETEMAFHDVEEEEKEQMVNVHSEKLAIAFALINTKPGTEIKIIK 167
            +LEKL  KMREAG++ ETE+A HDVEEEE+E MV VHSE+LAIAF LI T+PGTEI+IIK
Sbjct: 688  KLEKLEGKMREAGYQPETELALHDVEEEERELMVKVHSERLAIAFGLIATEPGTEIRIIK 747

Query: 166  NLRVCLDCHNATKFISKITERVIVVRDANRFHHFKDGVCSCGDFW 32
            NLRVCLDCH ATK ISKITERVIVVRDANRFHHFKDGVCSCGD+W
Sbjct: 748  NLRVCLDCHTATKLISKITERVIVVRDANRFHHFKDGVCSCGDYW 792