BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00039311
         (517 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]       131   3e-39
dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like ...   122   2e-38
emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-li...   122   2e-38
gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm,...   120   4e-37
dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]           122   7e-37

>gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thaliana]
          Length = 1213

 Score =  131 bits (329), Expect(2) = 3e-39
 Identities = 60/124 (48%), Positives = 88/124 (70%)
 Frame = -1

Query: 517 LREVNATCISLVPKIQTPTSLNDYRPIACCNVIYKCITKIITLRMKPIMHDVVSLKQSTF 338
           L++ NAT I L+PKI  PT  +D+RPI+C N +YK I +++T R++ ++  V+S  QS F
Sbjct: 500 LKQWNATTIVLIPKIVNPTCTSDFRPISCLNTLYKVIARLLTDRLQRLLSGVISSAQSAF 559

Query: 337 IPRRSI*DNILLSQELLHNYHRDAYPPRCAAKIDLKKAYDSVRWEVVIFTLRRIGIPEKL 158
           +P RS+ +N+LL+ +L+H Y+     PR   K+DLKKA+DSVRWE VI  LR + IPEK 
Sbjct: 560 LPGRSLAENVLLATDLVHGYNWSNISPRGMLKVDLKKAFDSVRWEFVIAALRALAIPEKF 619

Query: 157 ISWV 146
           I+W+
Sbjct: 620 INWI 623



 Score = 55.8 bits (133), Expect(2) = 3e-39
 Identities = 23/48 (47%), Positives = 34/48 (70%)
 Frame = -2

Query: 144 ECMGTASFSFMVNDTPYGYFKGKRGIRQGDPISPYLFVLVMKLFFDFL 1
           +C+ T +F+  +N    G+FK  +G+RQGDP+SPYLFVL M+ F + L
Sbjct: 625 QCISTPTFTVSINGGNGGFFKSTKGLRQGDPLSPYLFVLAMEAFSNLL 672


>dbj|BAB01845.1| non-LTR retroelement reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 893

 Score =  122 bits (307), Expect(2) = 2e-38
 Identities = 51/124 (41%), Positives = 85/124 (68%)
 Frame = -1

Query: 517 LREVNATCISLVPKIQTPTSLNDYRPIACCNVIYKCITKIITLRMKPIMHDVVSLKQSTF 338
           L++ NAT + L+PKI   + + D+RPI+C N +YK I K++T R+K ++++V+S  QS F
Sbjct: 501 LKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAF 560

Query: 337 IPRRSI*DNILLSQELLHNYHRDAYPPRCAAKIDLKKAYDSVRWEVVIFTLRRIGIPEKL 158
           +P R + +N+LL+ E++H Y+      R   K+DL+KA+DSVRW+ +I   R + +PEK 
Sbjct: 561 LPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKF 620

Query: 157 ISWV 146
           + W+
Sbjct: 621 VCWI 624



 Score = 61.2 bits (147), Expect(2) = 2e-38
 Identities = 26/48 (54%), Positives = 35/48 (72%)
 Frame = -2

Query: 144 ECMGTASFSFMVNDTPYGYFKGKRGIRQGDPISPYLFVLVMKLFFDFL 1
           +C+ T  FS MVN +  G+FK  +G+RQGDP+SPYLFVL M++F   L
Sbjct: 626 QCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLL 673


>emb|CAA66812.1| non-ltr retrotransposon reverse transcriptase-like protein
           [Arabidopsis thaliana]
          Length = 893

 Score =  122 bits (307), Expect(2) = 2e-38
 Identities = 51/124 (41%), Positives = 85/124 (68%)
 Frame = -1

Query: 517 LREVNATCISLVPKIQTPTSLNDYRPIACCNVIYKCITKIITLRMKPIMHDVVSLKQSTF 338
           L++ NAT + L+PKI   + + D+RPI+C N +YK I K++T R+K ++++V+S  QS F
Sbjct: 501 LKQWNATTLVLIPKITNSSKMTDFRPISCLNTLYKVIAKLLTSRLKKLLNEVISPSQSAF 560

Query: 337 IPRRSI*DNILLSQELLHNYHRDAYPPRCAAKIDLKKAYDSVRWEVVIFTLRRIGIPEKL 158
           +P R + +N+LL+ E++H Y+      R   K+DL+KA+DSVRW+ +I   R + +PEK 
Sbjct: 561 LPGRLLSENVLLATEIVHGYNTKNISSRGMLKVDLRKAFDSVRWDFIISAFRALAVPEKF 620

Query: 157 ISWV 146
           + W+
Sbjct: 621 VCWI 624



 Score = 61.2 bits (147), Expect(2) = 2e-38
 Identities = 26/48 (54%), Positives = 35/48 (72%)
 Frame = -2

Query: 144 ECMGTASFSFMVNDTPYGYFKGKRGIRQGDPISPYLFVLVMKLFFDFL 1
           +C+ T  FS MVN +  G+FK  +G+RQGDP+SPYLFVL M++F   L
Sbjct: 626 QCISTPYFSVMVNGSSSGFFKSNKGLRQGDPLSPYLFVLAMEVFSSLL 673


>gb|AAC28221.1| similar to reverse transcriptases (PFam: rvt.hmm, score: 60.13)
           [Arabidopsis thaliana]
          Length = 1164

 Score =  120 bits (302), Expect(2) = 4e-37
 Identities = 52/124 (41%), Positives = 84/124 (67%)
 Frame = -1

Query: 517 LREVNATCISLVPKIQTPTSLNDYRPIACCNVIYKCITKIITLRMKPIMHDVVSLKQSTF 338
           L++ NAT + L+PKI   +S++D+RPI+C N +YK I+K++T R+K  +   +S  QS F
Sbjct: 397 LKQWNATNLVLIPKITNASSMSDFRPISCLNTVYKVISKLLTDRLKDFLPAAISHSQSAF 456

Query: 337 IPRRSI*DNILLSQELLHNYHRDAYPPRCAAKIDLKKAYDSVRWEVVIFTLRRIGIPEKL 158
           +P R   +N+LL+ EL+H Y++    P    K+DL+KA+DSVRW+ ++  LR + +PEK 
Sbjct: 457 MPGRLFLENVLLATELVHGYNKKNIAPSSMLKVDLRKAFDSVRWDFIVSALRALNVPEKF 516

Query: 157 ISWV 146
             W+
Sbjct: 517 TCWI 520



 Score = 58.9 bits (141), Expect(2) = 4e-37
 Identities = 26/48 (54%), Positives = 35/48 (72%)
 Frame = -2

Query: 144 ECMGTASFSFMVNDTPYGYFKGKRGIRQGDPISPYLFVLVMKLFFDFL 1
           EC+ TASFS ++N    G+F   +G+RQGDP+SPYLFVL M++F   L
Sbjct: 522 ECLSTASFSVILNGHSAGHFWSSKGLRQGDPMSPYLFVLAMEVFSGLL 569


>dbj|BAF01687.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1072

 Score =  122 bits (305), Expect(2) = 7e-37
 Identities = 53/124 (42%), Positives = 87/124 (70%)
 Frame = -1

Query: 517 LREVNATCISLVPKIQTPTSLNDYRPIACCNVIYKCITKIITLRMKPIMHDVVSLKQSTF 338
           L++ NAT + L+PK     +++++RPI+C N +YK I+K++T R++ ++  V+   QS F
Sbjct: 360 LKQWNATTLVLIPKTSNACTISEFRPISCLNTLYKVISKLLTSRLQGLLSAVIGHSQSAF 419

Query: 337 IPRRSI*DNILLSQELLHNYHRDAYPPRCAAKIDLKKAYDSVRWEVVIFTLRRIGIPEKL 158
           +P RS+ +N+LL+ E++H Y+R    PR   K+DLKKA+DSV+WE V   LR + IPE+ 
Sbjct: 420 LPGRSLAENVLLATEMVHGYNRLNISPRGMLKVDLKKAFDSVKWEFVTAALRALAIPERY 479

Query: 157 ISWV 146
           I+W+
Sbjct: 480 INWI 483



 Score = 57.0 bits (136), Expect(2) = 7e-37
 Identities = 24/48 (50%), Positives = 34/48 (70%)
 Frame = -2

Query: 144 ECMGTASFSFMVNDTPYGYFKGKRGIRQGDPISPYLFVLVMKLFFDFL 1
           +C+ T SF+  VN    G+F+  +G+RQGDP+SPYLFVL M++F   L
Sbjct: 485 QCITTPSFTISVNGATGGFFRSTKGLRQGDPLSPYLFVLAMEVFSKLL 532